| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213692293
Identifier: 213692293
GI number: 213692293
Start: 1579018
End: 1580442
Strand: Reverse
Name: 213692293
Synonym: Blon_1416
Alternate gene names: NA
Gene position: 1580442-1579018 (Counterclockwise)
Preceding gene: 213692294
Following gene: 213692292
Centisome position: 55.79
GC content: 64.63
Gene sequence:
>1425_bases GTGGCTAGGTATGTGCTGCGTGTGTTCCGCGACAATGTCACGGGATGGGTACCCACGATTCTGGTGGTCGCAGTGGTGAC CACGCTGGTGGGCATATGCATGAACCAATTCGTGTGGACCTCGTCTCCGTCGTTCACATTGGCCGCGCGGCAGGCGGGTC TTGATCCGGCCGAGTTCGGCATGGTGTCGGTCACGATCTATGTGGTGGTGTCATTTCTCGCGTTCTTCTCGTTGACGGTG GTCGGCTCGGCCACGGTCAACCGTATTCACAGCACGTTCGCGCAATGGCGGCTTATGGGCGCCAGCCCGAGTCAGGTGCT TGCCAGCATGTGGATGCTCGTGGGTGTGGCGAGCCTGTTCGGTTCCCTGATCGGCTCTCTGGCTGCAGTGCCGGCCAGCC TGCTGGCGGTTCCCGAGTTCAACGCCATGGCTGCGGAAAGCTTCGCCGATGGATTCGGCTCGTTCGCACCTCCTGCGTTC ACGCCGTCGATGGCCGCGTGGCTCGGATCCCTGCTGTTGGGTGTGGCCACGTGCATGTTGGGCGCGTCCATCCCCTCGCT GCGCGCAGCGAAGATCCGTCCCATCGAGGTGATTCGCGGCACGGGAGCCATCGGGATACGGCACGGTTGGCGGTCTTGGG CGCACTGGGCACTTGGTTTGATTGTCATGGCGGCGGCGCTGGCATTGGCGTTCTCCGGCATGGGCACGCCACGGGCGCTC GCGTTCGGCCAGGAGGCGGGGCAGACATTCAACAGCGCGCTGTGGGCCGGCATCATCGCCTCGTTCGGCATGTACATCCT TGTCAGCATGCTGATTCCGATTCTGTTGGGCATCGGACGTGTCGTGTGTCGCCTGTGCGGGTCCGCGACCGGCGTGCTCG CCGCCCGTTCCGCCGAGGCGAAGGCCGCCAGCAACACGAACACGATTGCCCCGCTCGCCCTTGCCATGGGACTGTCGGTC ACCCTGCTGACCTGCGCGCGATCCTATGGCCGGATACTCGCCTTGGGCGGCCATCCGAAGAGCCTGAACTACGCGGACTC GCTGCTGCTCATAACGATGCTGTGCATCGTGTCCCTGGCCACCAGCATGGCGGTCATCGCCCTGTCGAACCGCAGCATGG TCGCCGACCAGGCATTGCTGCGCAGCATCGGCCTGTCCCCACGTCGTGTGATCCGCATGTATCTCTGGCAGAGCCTGCAG CTGGCCGCCGGCGCGGTCATTCTCTCGCTCATCCCGGTCGCCGTCAGCGCAAGCGTTTTCGCCGCAAGATCCGCGGCGCT CGTCGGCATCCCCGTGGCCGAAATCCCATGGCCGGGCGTAATCGGCATGGGCACGGCCTGCTGGCTGGCATTGTTCCTCA TCCAGTTCACGCAGATTCGCCCCGCGCTACACCGCAGCGTGGCCGACACGATACGCACATGCTGA
Upstream 100 bases:
>100_bases GTCGGCCCGATGATGGTGAACGCCCAGCCTATCCAATCCGTCCAACCGGGCCGACCGGTCCAGCGCGTGGCGTATCCGCA GCAGCGGAAGGAGGCTCATC
Downstream 100 bases:
>100_bases CATGCACGCAACATCATACAAAAAGAGCCACAATGGGAGCCATGAAACCGCAATCCGCGCAGGCCAATAAGGTCACGGTC CTGGCCGTGCCACTGGTCAT
Product: hypothetical protein
Products: NA
Alternate protein names: Lipoprotein Release ABC Transporter Permease
Number of amino acids: Translated: 474; Mature: 473
Protein sequence:
>474_residues MARYVLRVFRDNVTGWVPTILVVAVVTTLVGICMNQFVWTSSPSFTLAARQAGLDPAEFGMVSVTIYVVVSFLAFFSLTV VGSATVNRIHSTFAQWRLMGASPSQVLASMWMLVGVASLFGSLIGSLAAVPASLLAVPEFNAMAAESFADGFGSFAPPAF TPSMAAWLGSLLLGVATCMLGASIPSLRAAKIRPIEVIRGTGAIGIRHGWRSWAHWALGLIVMAAALALAFSGMGTPRAL AFGQEAGQTFNSALWAGIIASFGMYILVSMLIPILLGIGRVVCRLCGSATGVLAARSAEAKAASNTNTIAPLALAMGLSV TLLTCARSYGRILALGGHPKSLNYADSLLLITMLCIVSLATSMAVIALSNRSMVADQALLRSIGLSPRRVIRMYLWQSLQ LAAGAVILSLIPVAVSASVFAARSAALVGIPVAEIPWPGVIGMGTACWLALFLIQFTQIRPALHRSVADTIRTC
Sequences:
>Translated_474_residues MARYVLRVFRDNVTGWVPTILVVAVVTTLVGICMNQFVWTSSPSFTLAARQAGLDPAEFGMVSVTIYVVVSFLAFFSLTV VGSATVNRIHSTFAQWRLMGASPSQVLASMWMLVGVASLFGSLIGSLAAVPASLLAVPEFNAMAAESFADGFGSFAPPAF TPSMAAWLGSLLLGVATCMLGASIPSLRAAKIRPIEVIRGTGAIGIRHGWRSWAHWALGLIVMAAALALAFSGMGTPRAL AFGQEAGQTFNSALWAGIIASFGMYILVSMLIPILLGIGRVVCRLCGSATGVLAARSAEAKAASNTNTIAPLALAMGLSV TLLTCARSYGRILALGGHPKSLNYADSLLLITMLCIVSLATSMAVIALSNRSMVADQALLRSIGLSPRRVIRMYLWQSLQ LAAGAVILSLIPVAVSASVFAARSAALVGIPVAEIPWPGVIGMGTACWLALFLIQFTQIRPALHRSVADTIRTC >Mature_473_residues ARYVLRVFRDNVTGWVPTILVVAVVTTLVGICMNQFVWTSSPSFTLAARQAGLDPAEFGMVSVTIYVVVSFLAFFSLTVV GSATVNRIHSTFAQWRLMGASPSQVLASMWMLVGVASLFGSLIGSLAAVPASLLAVPEFNAMAAESFADGFGSFAPPAFT PSMAAWLGSLLLGVATCMLGASIPSLRAAKIRPIEVIRGTGAIGIRHGWRSWAHWALGLIVMAAALALAFSGMGTPRALA FGQEAGQTFNSALWAGIIASFGMYILVSMLIPILLGIGRVVCRLCGSATGVLAARSAEAKAASNTNTIAPLALAMGLSVT LLTCARSYGRILALGGHPKSLNYADSLLLITMLCIVSLATSMAVIALSNRSMVADQALLRSIGLSPRRVIRMYLWQSLQL AAGAVILSLIPVAVSASVFAARSAALVGIPVAEIPWPGVIGMGTACWLALFLIQFTQIRPALHRSVADTIRTC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49661; Mature: 49529
Theoretical pI: Translated: 10.81; Mature: 10.81
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARYVLRVFRDNVTGWVPTILVVAVVTTLVGICMNQFVWTSSPSFTLAARQAGLDPAEFG CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEHHHHCCCCHHHHH MVSVTIYVVVSFLAFFSLTVVGSATVNRIHSTFAQWRLMGASPSQVLASMWMLVGVASLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHH GSLIGSLAAVPASLLAVPEFNAMAAESFADGFGSFAPPAFTPSMAAWLGSLLLGVATCML HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH GASIPSLRAAKIRPIEVIRGTGAIGIRHGWRSWAHWALGLIVMAAALALAFSGMGTPRAL HCCCCCCCCCCCCHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH AFGQEAGQTFNSALWAGIIASFGMYILVSMLIPILLGIGRVVCRLCGSATGVLAARSAEA HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHH KAASNTNTIAPLALAMGLSVTLLTCARSYGRILALGGHPKSLNYADSLLLITMLCIVSLA HCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH TSMAVIALSNRSMVADQALLRSIGLSPRRVIRMYLWQSLQLAAGAVILSLIPVAVSASVF HHHHHHEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AARSAALVGIPVAEIPWPGVIGMGTACWLALFLIQFTQIRPALHRSVADTIRTC HHHHHHHEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ARYVLRVFRDNVTGWVPTILVVAVVTTLVGICMNQFVWTSSPSFTLAARQAGLDPAEFG HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEEHHHHCCCCHHHHH MVSVTIYVVVSFLAFFSLTVVGSATVNRIHSTFAQWRLMGASPSQVLASMWMLVGVASLF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHH GSLIGSLAAVPASLLAVPEFNAMAAESFADGFGSFAPPAFTPSMAAWLGSLLLGVATCML HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH GASIPSLRAAKIRPIEVIRGTGAIGIRHGWRSWAHWALGLIVMAAALALAFSGMGTPRAL HCCCCCCCCCCCCHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH AFGQEAGQTFNSALWAGIIASFGMYILVSMLIPILLGIGRVVCRLCGSATGVLAARSAEA HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHH KAASNTNTIAPLALAMGLSVTLLTCARSYGRILALGGHPKSLNYADSLLLITMLCIVSLA HCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHHH TSMAVIALSNRSMVADQALLRSIGLSPRRVIRMYLWQSLQLAAGAVILSLIPVAVSASVF HHHHHHEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AARSAALVGIPVAEIPWPGVIGMGTACWLALFLIQFTQIRPALHRSVADTIRTC HHHHHHHEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA