| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is insQ [H]
Identifier: 213692230
GI number: 213692230
Start: 1522180
End: 1523640
Strand: Direct
Name: insQ [H]
Synonym: Blon_1350
Alternate gene names: 213692230
Gene position: 1522180-1523640 (Clockwise)
Preceding gene: 213692229
Following gene: 213692237
Centisome position: 53.74
GC content: 59.82
Gene sequence:
>1461_bases ATGAGCCAGAAGGTACGAATCATCAAAGTCAGGCATGCGGGCGCATCCGTGTACCTTGGCGACGATTCATGCCGCAACCA TTGCTGGACGCGCAATCCCGAACGTATCATGGACTGGCTGTGCGATGGTTGGCGCACCCGTTTCAACCAGCATCGGGAGC ATCGGACAATCCGCCGCTACATGGAGGACGTGGAATCCCGTGAGCGCATGTGGGTGGACGTTCCCTTGGGTGGGGCGACC GTCGGGGAGCCGTTCAAGGACAGCGAGGCTCGAATCCGGTGTTCTTGGCTCGCATGCATTCCCTCCGCCGTTCTCGCCAG TCCCATGCGCGTGGAGAATTCGGAATGGTATGCCGCGTTGAAGCGCAAGAAGATTAATGGCGGTCGTGTTCCGGGGTTCA AATCCCGCAAACGCGCCCCCCAGTATTTCGTATGTTGGCGCAACCAGAACAAGACCGGCAACGCCGTCTACCATCAGGTG TCACGCAAGCGTGGCGTGGTCGTAATCACCGGAAGCGTGAAAAAGGAATTCCGCAAGCCGGGCGAAACGGGATGCCGTTG GATGCTCTCCATCCACGTGCGCGTCAGCCAACCCGTCAGGGATTACACGAGCGTGGCGGTGAATTGGACGGAACGCACTC TGGCGTTCACCAACGAACCGTCGCCCATCCGACGGAATGCCGCCGGCAAGCAGACCGGTATCGACCGTGGCTGCGTCCAC ACATTGGCCTTGTCGAATGGAACCATGCTGGACATGCCGCAACCGTCCGAACGGGAGAAGCGAGAGTATCTGCGCCTGCA ACGCAAGCTCGCCCGACAAGACATGACCAACAGCCGACGTGGCGGGAAAACCGCGAAATTCCAGTCGAAACGACGCAAAC TCACATTGAAGCGCATGAGTTCGATACGCCGCCGCATCAACAACCGCAAGGACGATTGGGTCGCGAAGACCACGACCCGA CTGGTCGAAGACTACGACCTCATCGCCTTGGAAGCGTTGAACACCCGGCAGATGACCCGCAAGCCGAAACCGAAACAGGA CCCCGACCATAAGGGACGCTACCTGCGCAACGGTTCGGCGGCCAAAGCGGGATTGAACCGCAGTATCCTCGGCAACCGTT GGACGGACATCCAGGACAAACTCGAATACAAGACCCGTCTCGCCGGGACCCGGCTCATACTGGTCAACCCGGCGTACACG TCCCAGACCTGCAACCGTTGCGGCCATGTCGCAAAGGAGAACCGTGAGAGCCAAGCGGTCTTCCACTGCGTCACCTGCGG CAACAAGGACAATGCGGACATCAACGCGGCCAAGAACATCCTCGACCGCGCGATACACACAACCGGCATGGACGATGCCG AGGGCGTGGAGGGACACGCTTCCCGTGAAACCTGTGTTTCACGGGAAGGTTCCGTTGAAACGCCAACCCCTGCCACGCGT ACGGGAAGACCCCTCCAATGA
Upstream 100 bases:
>100_bases GGGTCGGTGACCGGTTTGGCGGCGCAAGCCCCGTCTTTTAAGGCTGGGGTGAGCCGCCACTTCTTTGATTAATCACTGTT TCCGTGGCAAGGTTTATAGC
Downstream 100 bases:
>100_bases GTGAGGAACGTGTCTCACATGCGACAGGAATCCCCCGGCTTCAGCCGAGGGGAGGAAGTCAAGTGATATCCACGCTCAAC CCCGATTCGACCGAACCGGA
Product: transposase, IS605 OrfB family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 486; Mature: 485
Protein sequence:
>486_residues MSQKVRIIKVRHAGASVYLGDDSCRNHCWTRNPERIMDWLCDGWRTRFNQHREHRTIRRYMEDVESRERMWVDVPLGGAT VGEPFKDSEARIRCSWLACIPSAVLASPMRVENSEWYAALKRKKINGGRVPGFKSRKRAPQYFVCWRNQNKTGNAVYHQV SRKRGVVVITGSVKKEFRKPGETGCRWMLSIHVRVSQPVRDYTSVAVNWTERTLAFTNEPSPIRRNAAGKQTGIDRGCVH TLALSNGTMLDMPQPSEREKREYLRLQRKLARQDMTNSRRGGKTAKFQSKRRKLTLKRMSSIRRRINNRKDDWVAKTTTR LVEDYDLIALEALNTRQMTRKPKPKQDPDHKGRYLRNGSAAKAGLNRSILGNRWTDIQDKLEYKTRLAGTRLILVNPAYT SQTCNRCGHVAKENRESQAVFHCVTCGNKDNADINAAKNILDRAIHTTGMDDAEGVEGHASRETCVSREGSVETPTPATR TGRPLQ
Sequences:
>Translated_486_residues MSQKVRIIKVRHAGASVYLGDDSCRNHCWTRNPERIMDWLCDGWRTRFNQHREHRTIRRYMEDVESRERMWVDVPLGGAT VGEPFKDSEARIRCSWLACIPSAVLASPMRVENSEWYAALKRKKINGGRVPGFKSRKRAPQYFVCWRNQNKTGNAVYHQV SRKRGVVVITGSVKKEFRKPGETGCRWMLSIHVRVSQPVRDYTSVAVNWTERTLAFTNEPSPIRRNAAGKQTGIDRGCVH TLALSNGTMLDMPQPSEREKREYLRLQRKLARQDMTNSRRGGKTAKFQSKRRKLTLKRMSSIRRRINNRKDDWVAKTTTR LVEDYDLIALEALNTRQMTRKPKPKQDPDHKGRYLRNGSAAKAGLNRSILGNRWTDIQDKLEYKTRLAGTRLILVNPAYT SQTCNRCGHVAKENRESQAVFHCVTCGNKDNADINAAKNILDRAIHTTGMDDAEGVEGHASRETCVSREGSVETPTPATR TGRPLQ >Mature_485_residues SQKVRIIKVRHAGASVYLGDDSCRNHCWTRNPERIMDWLCDGWRTRFNQHREHRTIRRYMEDVESRERMWVDVPLGGATV GEPFKDSEARIRCSWLACIPSAVLASPMRVENSEWYAALKRKKINGGRVPGFKSRKRAPQYFVCWRNQNKTGNAVYHQVS RKRGVVVITGSVKKEFRKPGETGCRWMLSIHVRVSQPVRDYTSVAVNWTERTLAFTNEPSPIRRNAAGKQTGIDRGCVHT LALSNGTMLDMPQPSEREKREYLRLQRKLARQDMTNSRRGGKTAKFQSKRRKLTLKRMSSIRRRINNRKDDWVAKTTTRL VEDYDLIALEALNTRQMTRKPKPKQDPDHKGRYLRNGSAAKAGLNRSILGNRWTDIQDKLEYKTRLAGTRLILVNPAYTS QTCNRCGHVAKENRESQAVFHCVTCGNKDNADINAAKNILDRAIHTTGMDDAEGVEGHASRETCVSREGSVETPTPATRT GRPLQ
Specific function: Required for the transposition of the insertion element (Potential) [H]
COG id: COG0675
COG function: function code L; Transposase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transposase 35 family [H]
Homologues:
Organism=Escherichia coli, GI288549314, Length=221, Percent_Identity=35.2941176470588, Blast_Score=124, Evalue=2e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001959 - InterPro: IPR010095 - InterPro: IPR021027 [H]
Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]
EC number: NA
Molecular weight: Translated: 55658; Mature: 55527
Theoretical pI: Translated: 10.93; Mature: 10.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQKVRIIKVRHAGASVYLGDDSCRNHCWTRNPERIMDWLCDGWRTRFNQHREHRTIRRY CCCCEEEEEEEECCCEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH MEDVESRERMWVDVPLGGATVGEPFKDSEARIRCSWLACIPSAVLASPMRVENSEWYAAL HHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCEECCCHHHHHH KRKKINGGRVPGFKSRKRAPQYFVCWRNQNKTGNAVYHQVSRKRGVVVITGSVKKEFRKP HHHCCCCCCCCCCCHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCHHHHHCCC GETGCRWMLSIHVRVSQPVRDYTSVAVNWTERTLAFTNEPSPIRRNAAGKQTGIDRGCVH CCCCCEEEEEEEEEECCCHHHHHHEEEEECCEEEEECCCCCCHHHCCCCCCCCCCHHHHE TLALSNGTMLDMPQPSEREKREYLRLQRKLARQDMTNSRRGGKTAKFQSKRRKLTLKRMS EEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH SIRRRINNRKDDWVAKTTTRLVEDYDLIALEALNTRQMTRKPKPKQDPDHKGRYLRNGSA HHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEHHCHHHHHCCCCCCCCCCCCCCEECCCCH AKAGLNRSILGNRWTDIQDKLEYKTRLAGTRLILVNPAYTSQTCNRCGHVAKENRESQAV HHHCCCHHHCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEE FHCVTCGNKDNADINAAKNILDRAIHTTGMDDAEGVEGHASRETCVSREGSVETPTPATR EEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC TGRPLQ CCCCCC >Mature Secondary Structure SQKVRIIKVRHAGASVYLGDDSCRNHCWTRNPERIMDWLCDGWRTRFNQHREHRTIRRY CCCEEEEEEEECCCEEEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH MEDVESRERMWVDVPLGGATVGEPFKDSEARIRCSWLACIPSAVLASPMRVENSEWYAAL HHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCEECCCHHHHHH KRKKINGGRVPGFKSRKRAPQYFVCWRNQNKTGNAVYHQVSRKRGVVVITGSVKKEFRKP HHHCCCCCCCCCCCHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCHHHHHCCC GETGCRWMLSIHVRVSQPVRDYTSVAVNWTERTLAFTNEPSPIRRNAAGKQTGIDRGCVH CCCCCEEEEEEEEEECCCHHHHHHEEEEECCEEEEECCCCCCHHHCCCCCCCCCCHHHHE TLALSNGTMLDMPQPSEREKREYLRLQRKLARQDMTNSRRGGKTAKFQSKRRKLTLKRMS EEEECCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH SIRRRINNRKDDWVAKTTTRLVEDYDLIALEALNTRQMTRKPKPKQDPDHKGRYLRNGSA HHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEHHCHHHHHCCCCCCCCCCCCCCEECCCCH AKAGLNRSILGNRWTDIQDKLEYKTRLAGTRLILVNPAYTSQTCNRCGHVAKENRESQAV HHHCCCHHHCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEE FHCVTCGNKDNADINAAKNILDRAIHTTGMDDAEGVEGHASRETCVSREGSVETPTPATR EEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC TGRPLQ CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]