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The map label for this gene is ydcM [C]

Identifier: 213692195

GI number: 213692195

Start: 1497605

End: 1498834

Strand: Reverse

Name: ydcM [C]

Synonym: Blon_1315

Alternate gene names: 213692195

Gene position: 1498834-1497605 (Counterclockwise)

Preceding gene: 213692218

Following gene: 213692144

Centisome position: 52.91

GC content: 61.22

Gene sequence:

>1230_bases
ATGGTCAGAAGGCTGGCGTGCAAGCGGGCGTACAGGTTCCGCTTCTACCCGACGCCCGAGCAGGAGCAACTGCTCAGGCG
CACGGTCGGCTGCTGCCGAAAGGTCTACAACCTCGCGTTGGAAGCCCGCTCCACCGCATGGACGGCGGAGCGCAGGAGCA
TCACCTACGTCCAGACCAGCGCCATGCTCACCCAATGGAAGCAAACGGCTGAATACTCGTACATGAACGAAGTGTCCTGC
GTGCCGTTGCAACAGGCGTTGAGGCACTTGCAGACGGCGTTCTCCAACTTCTTCAAGCAGACCGGCGACTATCCGAGATT
CAAGGCAAAATCCCACGGCGGAAGCGCCGAATACACTCGAAGCGCGTTCACATGGGACGCCAAGCGCAACGAACTCACAC
TCGCCAAGATGCGCGGACCATTGCCGATACGATGGTCCAGAACACTGCCCCGCAAGACGGAGCCGAGCACCGTGACCGTA
AGCTTGGACGCCGCCGGACGATGGCACGTCAGCATCCTCGTGGAGGAGGCCATCCGTCCTCTCCCCGCCCGAGGGGACGC
CGTCGGAATCGACTTGGGAGTGGACAGCTACGCCGTCACCAGCGACGGGGAGACCATAGCGAACCCACGCCACTACAGGA
AACTCGCCGAACGGTTGGAACGGGAGCAACGGGCGTTGTCCCGCAAAACCAAAGGCGGCAACAATCGTCGGAAAGCCGCC
CTCAAGGTGGCCCGCACCTACGCCAGAATCACGGACATGCGCCGTGACTTCCTCCACAAGTTGAGCACGAGGATAATCCG
CGAGAACCAAACGGTGGTACTCGAAGACCTCAACGTGAGGAACATGGCCAGAAGATGCGCGCCGAAACCCGACCCGGACA
ATCCGAACCATTGGCTCCCCAACGGCCAGTCCGCGAAAAACGGGCTGAACGGGAGCATCATGGACGCCGGATGGTCGGAG
TTCCGTCGAATGCTCGAATACAAGGCCGAATGGTACGGGCGAAAGCTCATAACCATCGACAGGTATTATCCGAGCACGCA
AATCTGCTCCCACTGCGGGGCGAAGACCGGGCCGAAGGGCATGCCCGGCCTCACGGTCAGGGCATGGACGTGCCCGGACT
GCGGAACAACCCATGACAGGGATTTGAACGCAGCCGAAAACATCCTCGCCGCAGGGCTTGCGGTCAGCGTCTGCAAGGAC
GGCAGAACCGGAACCAAGGTCTCGCATTAG

Upstream 100 bases:

>100_bases
TGGTCGCTCATCGTTTTTGGTTTGCGGAGACCTCGTCCTTTAGGGCGGGGAGGAAGCAAACCGTCCTCCTTTCACAGATT
GATATGATATAATGTGAAAC

Downstream 100 bases:

>100_bases
CGTCCCCTCCCTTCTTGTCTTGTCGTGGCGAACAGAAACCCGAACCGTGAGATTCGGGAATCCCCCGCATTCATGCGGGG
GAGGATGTCAATCGTCTTCT

Product: transposase, IS605 OrfB family

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MVRRLACKRAYRFRFYPTPEQEQLLRRTVGCCRKVYNLALEARSTAWTAERRSITYVQTSAMLTQWKQTAEYSYMNEVSC
VPLQQALRHLQTAFSNFFKQTGDYPRFKAKSHGGSAEYTRSAFTWDAKRNELTLAKMRGPLPIRWSRTLPRKTEPSTVTV
SLDAAGRWHVSILVEEAIRPLPARGDAVGIDLGVDSYAVTSDGETIANPRHYRKLAERLEREQRALSRKTKGGNNRRKAA
LKVARTYARITDMRRDFLHKLSTRIIRENQTVVLEDLNVRNMARRCAPKPDPDNPNHWLPNGQSAKNGLNGSIMDAGWSE
FRRMLEYKAEWYGRKLITIDRYYPSTQICSHCGAKTGPKGMPGLTVRAWTCPDCGTTHDRDLNAAENILAAGLAVSVCKD
GRTGTKVSH

Sequences:

>Translated_409_residues
MVRRLACKRAYRFRFYPTPEQEQLLRRTVGCCRKVYNLALEARSTAWTAERRSITYVQTSAMLTQWKQTAEYSYMNEVSC
VPLQQALRHLQTAFSNFFKQTGDYPRFKAKSHGGSAEYTRSAFTWDAKRNELTLAKMRGPLPIRWSRTLPRKTEPSTVTV
SLDAAGRWHVSILVEEAIRPLPARGDAVGIDLGVDSYAVTSDGETIANPRHYRKLAERLEREQRALSRKTKGGNNRRKAA
LKVARTYARITDMRRDFLHKLSTRIIRENQTVVLEDLNVRNMARRCAPKPDPDNPNHWLPNGQSAKNGLNGSIMDAGWSE
FRRMLEYKAEWYGRKLITIDRYYPSTQICSHCGAKTGPKGMPGLTVRAWTCPDCGTTHDRDLNAAENILAAGLAVSVCKD
GRTGTKVSH
>Mature_409_residues
MVRRLACKRAYRFRFYPTPEQEQLLRRTVGCCRKVYNLALEARSTAWTAERRSITYVQTSAMLTQWKQTAEYSYMNEVSC
VPLQQALRHLQTAFSNFFKQTGDYPRFKAKSHGGSAEYTRSAFTWDAKRNELTLAKMRGPLPIRWSRTLPRKTEPSTVTV
SLDAAGRWHVSILVEEAIRPLPARGDAVGIDLGVDSYAVTSDGETIANPRHYRKLAERLEREQRALSRKTKGGNNRRKAA
LKVARTYARITDMRRDFLHKLSTRIIRENQTVVLEDLNVRNMARRCAPKPDPDNPNHWLPNGQSAKNGLNGSIMDAGWSE
FRRMLEYKAEWYGRKLITIDRYYPSTQICSHCGAKTGPKGMPGLTVRAWTCPDCGTTHDRDLNAAENILAAGLAVSVCKD
GRTGTKVSH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=377, Percent_Identity=34.4827586206897, Blast_Score=208, Evalue=4e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 46473; Mature: 46473

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRRLACKRAYRFRFYPTPEQEQLLRRTVGCCRKVYNLALEARSTAWTAERRSITYVQTS
CCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHH
AMLTQWKQTAEYSYMNEVSCVPLQQALRHLQTAFSNFFKQTGDYPRFKAKSHGGSAEYTR
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHH
SAFTWDAKRNELTLAKMRGPLPIRWSRTLPRKTEPSTVTVSLDAAGRWHVSILVEEAIRP
HHEEECCCCCCEEHHHHCCCCCEEECCCCCCCCCCCEEEEEECCCCCEEHEEEEHHHHCC
LPARGDAVGIDLGVDSYAVTSDGETIANPRHYRKLAERLEREQRALSRKTKGGNNRRKAA
CCCCCCEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LKVARTYARITDMRRDFLHKLSTRIIRENQTVVLEDLNVRNMARRCAPKPDPDNPNHWLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCC
NGQSAKNGLNGSIMDAGWSEFRRMLEYKAEWYGRKLITIDRYYPSTQICSHCGAKTGPKG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHCCCCCCCCC
MPGLTVRAWTCPDCGTTHDRDLNAAENILAAGLAVSVCKDGRTGTKVSH
CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MVRRLACKRAYRFRFYPTPEQEQLLRRTVGCCRKVYNLALEARSTAWTAERRSITYVQTS
CCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHH
AMLTQWKQTAEYSYMNEVSCVPLQQALRHLQTAFSNFFKQTGDYPRFKAKSHGGSAEYTR
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHH
SAFTWDAKRNELTLAKMRGPLPIRWSRTLPRKTEPSTVTVSLDAAGRWHVSILVEEAIRP
HHEEECCCCCCEEHHHHCCCCCEEECCCCCCCCCCCEEEEEECCCCCEEHEEEEHHHHCC
LPARGDAVGIDLGVDSYAVTSDGETIANPRHYRKLAERLEREQRALSRKTKGGNNRRKAA
CCCCCCEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
LKVARTYARITDMRRDFLHKLSTRIIRENQTVVLEDLNVRNMARRCAPKPDPDNPNHWLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCC
NGQSAKNGLNGSIMDAGWSEFRRMLEYKAEWYGRKLITIDRYYPSTQICSHCGAKTGPKG
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHCCCCCCCCC
MPGLTVRAWTCPDCGTTHDRDLNAAENILAAGLAVSVCKDGRTGTKVSH
CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]