| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213692005
Identifier: 213692005
GI number: 213692005
Start: 1312589
End: 1313365
Strand: Reverse
Name: 213692005
Synonym: Blon_1123
Alternate gene names: NA
Gene position: 1313365-1312589 (Counterclockwise)
Preceding gene: 213692006
Following gene: 213692004
Centisome position: 46.36
GC content: 59.72
Gene sequence:
>777_bases ATGAACTGCCAGAACTGCAAGACGATAACCGAAGAGGGGTATTCACTGTGCGCAGCATGCGAGATGCGTTTCGCCGGCAC GCTCCTGCGATTGGCGCATGATGTCACGCCATTGCATGACAGCCTCGACGCGACATTGCATCCGGGCGGGCATTCGCCCG TGCGCATCCAGACGGCCACTCCCCCGACGCCTATCAGGCTTGACGTGCTCGACCTGCTGGACATGCTCGATGCGACGGCG CGCGAACTGTGGCGTTGTTTGGATGTCATCGATGCCTTGGACTGGCACAGGGATCCACGCATGGAGGACCTCGAGGCCAC GCTCATCGCATGCGCAGCCCATGCACGCCTTGCCACGTTCGCGGACGCAGGATTCTACATGGCGACCATCAACGGCATCG CCCGGAAAATCGACCTTGTTCTGGACCCGCCCGAACAACGCCGTGAAATCGGCACCTGCGAACTATGCGGGACCATGCTC GCCGCAGGTGCAAACGACCAATGGGTCACATGCCCCATATGCGGTACCGAGCAGCGTGTGCAGACCGTCAAACTGAGACG TTTGGAAAAGCTCTGCTGGGATGACAGTCGGCGTGGCTCGGCGGCGGAGATAGCCAAGGTGTTCGCGGACACGGGAATCG CCATCAAAAGGCATACGCTCACCGTGTGGAAATCCCGAGGCAAGCTTGATGTCACGCCCCAAGGCATTTCATACAGCAGC GTCTACCGGCTCGTCATCAGTGGCGAACTTGACAAAGAGCTGACTGTGACCGCATAA
Upstream 100 bases:
>100_bases GCCGTATTCGCGGCTCAAATATGAGAAAGCCCCAACCGTGGTCGGCCAGGGCGATGAGAAGCAAGCATTATTCTAGCCGA CCAGCCGGAAGGGGCTTAGC
Downstream 100 bases:
>100_bases TGTCAGTGGATTAGTGTCGAAGAGCCCAACCAAACGGTTGGGCTCTTCGCATATCCAGTCATATCTCATGGGCTGAGAGT ACTCCGCCGGCAGCGTCCAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 258; Mature: 258
Protein sequence:
>258_residues MNCQNCKTITEEGYSLCAACEMRFAGTLLRLAHDVTPLHDSLDATLHPGGHSPVRIQTATPPTPIRLDVLDLLDMLDATA RELWRCLDVIDALDWHRDPRMEDLEATLIACAAHARLATFADAGFYMATINGIARKIDLVLDPPEQRREIGTCELCGTML AAGANDQWVTCPICGTEQRVQTVKLRRLEKLCWDDSRRGSAAEIAKVFADTGIAIKRHTLTVWKSRGKLDVTPQGISYSS VYRLVISGELDKELTVTA
Sequences:
>Translated_258_residues MNCQNCKTITEEGYSLCAACEMRFAGTLLRLAHDVTPLHDSLDATLHPGGHSPVRIQTATPPTPIRLDVLDLLDMLDATA RELWRCLDVIDALDWHRDPRMEDLEATLIACAAHARLATFADAGFYMATINGIARKIDLVLDPPEQRREIGTCELCGTML AAGANDQWVTCPICGTEQRVQTVKLRRLEKLCWDDSRRGSAAEIAKVFADTGIAIKRHTLTVWKSRGKLDVTPQGISYSS VYRLVISGELDKELTVTA >Mature_258_residues MNCQNCKTITEEGYSLCAACEMRFAGTLLRLAHDVTPLHDSLDATLHPGGHSPVRIQTATPPTPIRLDVLDLLDMLDATA RELWRCLDVIDALDWHRDPRMEDLEATLIACAAHARLATFADAGFYMATINGIARKIDLVLDPPEQRREIGTCELCGTML AAGANDQWVTCPICGTEQRVQTVKLRRLEKLCWDDSRRGSAAEIAKVFADTGIAIKRHTLTVWKSRGKLDVTPQGISYSS VYRLVISGELDKELTVTA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28518; Mature: 28518
Theoretical pI: Translated: 5.90; Mature: 5.90
Prosite motif: PS00028 ZINC_FINGER_C2H2_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 6.6 %Cys+Met (Translated Protein) 4.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNCQNCKTITEEGYSLCAACEMRFAGTLLRLAHDVTPLHDSLDATLHPGGHSPVRIQTAT CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCEECCCCCCCEEEEECC PPTPIRLDVLDLLDMLDATARELWRCLDVIDALDWHRDPRMEDLEATLIACAAHARLATF CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH ADAGFYMATINGIARKIDLVLDPPEQRREIGTCELCGTMLAAGANDQWVTCPICGTEQRV HCCCCHHHHHHHHHHEEEEEECCHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCCCHHHH QTVKLRRLEKLCWDDSRRGSAAEIAKVFADTGIAIKRHTLTVWKSRGKLDVTPQGISYSS HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCEECCCCCCCHHH VYRLVISGELDKELTVTA HEEEEEECCCCCCEEECC >Mature Secondary Structure MNCQNCKTITEEGYSLCAACEMRFAGTLLRLAHDVTPLHDSLDATLHPGGHSPVRIQTAT CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCEECCCCCCCEEEEECC PPTPIRLDVLDLLDMLDATARELWRCLDVIDALDWHRDPRMEDLEATLIACAAHARLATF CCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH ADAGFYMATINGIARKIDLVLDPPEQRREIGTCELCGTMLAAGANDQWVTCPICGTEQRV HCCCCHHHHHHHHHHEEEEEECCHHHHHHCCHHHHHHHHHHCCCCCCEEEEECCCCHHHH QTVKLRRLEKLCWDDSRRGSAAEIAKVFADTGIAIKRHTLTVWKSRGKLDVTPQGISYSS HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEECCCCCEECCCCCCCHHH VYRLVISGELDKELTVTA HEEEEEECCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA