| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213691886
Identifier: 213691886
GI number: 213691886
Start: 1183651
End: 1184787
Strand: Direct
Name: 213691886
Synonym: Blon_0998
Alternate gene names: NA
Gene position: 1183651-1184787 (Clockwise)
Preceding gene: 213691885
Following gene: 213691887
Centisome position: 41.78
GC content: 68.51
Gene sequence:
>1137_bases ATGAACACACCTTGTTGCGCCGTGTGCGGCGAGCCGATGAAGCGGAACGGAAGGACGAGCTCGGGACGGATCAGGTGGCG GTGCCGGAACGCCGGCTGTGGGAGCTCACGCACCCAGTCGCGCGACAACAGCGCCCGTGATCTGCGGTGCGGTCTGGATT GGCTGTTCTCGAAGCAGTCGCAGGCCGAGCACCGGCTGCCGGCACGCACGCTGCGCCGCAGGTGCGAGCTCATGTGGGGC CTGTGGCCGCCCGTGCCGCTGGTGGACGAGGTGCATCATGTGGTGCATGTGGACGGCATCCACCTGCACCGCGACGCGGT GGTCCTGATCGCGGTGGCCGGCGGGCACGTGATCGGCTGGCACGTCGCCAAAAGCGAGAAAGCGGCGGCATGGCAGTGCC TGATGGCGCGCATCGCGCCGCCCGACGTGCTCGTGTGCGACGGCGGGGGCGGCGTCCTCAAGGCCGCGAAGGCCATGTGG CCGGATACGAGGATCCAGCGGTGCCTGTTCCACGTGCAGGCCAACATCCTCGAGCTGACCGGCAGGCGGCCCCGTCTGGA GGCGGGCGGACGGCTGCGCCGGGTGGCCCTGTCCCTGCCCCGCGTCGGGGACGCGGGCGGCGCGGCCGAATGGCTGGTCT CCTACAACCAGTGGGAGCAGGACTTCCATTCGTTCCTCGACGAGAAGAGCGAATACGCCGACGGCGGCGTGAACGACATG CACCAAAGGCTCGTCAAGGCACGGCGCATGATCCGCAGACGCATCCGCGAGGGCCACCTGTTCACGTTCCTCGACGAGGG GCTCGCGTCCGTCGGCCCGGTGCCGTCCACCAACAACCTCGTCGAATCATGGAACGCGCGCCTGCGCGACATGCTGCGCC GCCACCGCGGACTGCGGCTGGTCAGACGGCTGAAGGCGATCTGCTGGTGGTGCCACCAGCACACGGCGCATCCCGAGACC GACGCGTGGCTCGCGGCCAACGCGATGACCGACGAACGACTCGAGCGCCTCTACCGGCAGGCATGGGAGAGAAGCCCGCA AGGCCAGTACGAGACGTTCGGCATCCCCGCAAGATACGGCACCGGCATCGACTGGAACGAGTTCCACACCAGGGTCGAAT GGCAGTCGAACGACTAG
Upstream 100 bases:
>100_bases GGGAACTCGAGGTCGGCCAGAATGTGTGTCCGGAATGGCCGGTCAGGCCTTGCGGCACAACGGTTGAGTGACTTTCGAGT TGGCGTGGCAGATTGGGTGG
Downstream 100 bases:
>100_bases ACCACCAGACACACATTTTGGCCTATAACCCGTGAATAACGTATCTATAACCGTTCGGAGAGGTTCGATATACGGGCTGC TTGGCCCAAATGGCGCCGGT
Product: transposase for IS3509a
Products: NA
Alternate protein names: Transposase; Transposase For Insertion Sequence; MULE Transposase Family Protein
Number of amino acids: Translated: 378; Mature: 378
Protein sequence:
>378_residues MNTPCCAVCGEPMKRNGRTSSGRIRWRCRNAGCGSSRTQSRDNSARDLRCGLDWLFSKQSQAEHRLPARTLRRRCELMWG LWPPVPLVDEVHHVVHVDGIHLHRDAVVLIAVAGGHVIGWHVAKSEKAAAWQCLMARIAPPDVLVCDGGGGVLKAAKAMW PDTRIQRCLFHVQANILELTGRRPRLEAGGRLRRVALSLPRVGDAGGAAEWLVSYNQWEQDFHSFLDEKSEYADGGVNDM HQRLVKARRMIRRRIREGHLFTFLDEGLASVGPVPSTNNLVESWNARLRDMLRRHRGLRLVRRLKAICWWCHQHTAHPET DAWLAANAMTDERLERLYRQAWERSPQGQYETFGIPARYGTGIDWNEFHTRVEWQSND
Sequences:
>Translated_378_residues MNTPCCAVCGEPMKRNGRTSSGRIRWRCRNAGCGSSRTQSRDNSARDLRCGLDWLFSKQSQAEHRLPARTLRRRCELMWG LWPPVPLVDEVHHVVHVDGIHLHRDAVVLIAVAGGHVIGWHVAKSEKAAAWQCLMARIAPPDVLVCDGGGGVLKAAKAMW PDTRIQRCLFHVQANILELTGRRPRLEAGGRLRRVALSLPRVGDAGGAAEWLVSYNQWEQDFHSFLDEKSEYADGGVNDM HQRLVKARRMIRRRIREGHLFTFLDEGLASVGPVPSTNNLVESWNARLRDMLRRHRGLRLVRRLKAICWWCHQHTAHPET DAWLAANAMTDERLERLYRQAWERSPQGQYETFGIPARYGTGIDWNEFHTRVEWQSND >Mature_378_residues MNTPCCAVCGEPMKRNGRTSSGRIRWRCRNAGCGSSRTQSRDNSARDLRCGLDWLFSKQSQAEHRLPARTLRRRCELMWG LWPPVPLVDEVHHVVHVDGIHLHRDAVVLIAVAGGHVIGWHVAKSEKAAAWQCLMARIAPPDVLVCDGGGGVLKAAKAMW PDTRIQRCLFHVQANILELTGRRPRLEAGGRLRRVALSLPRVGDAGGAAEWLVSYNQWEQDFHSFLDEKSEYADGGVNDM HQRLVKARRMIRRRIREGHLFTFLDEGLASVGPVPSTNNLVESWNARLRDMLRRHRGLRLVRRLKAICWWCHQHTAHPET DAWLAANAMTDERLERLYRQAWERSPQGQYETFGIPARYGTGIDWNEFHTRVEWQSND
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43215; Mature: 43215
Theoretical pI: Translated: 9.81; Mature: 9.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTPCCAVCGEPMKRNGRTSSGRIRWRCRNAGCGSSRTQSRDNSARDLRCGLDWLFSKQS CCCCCCHHCCCHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHH QAEHRLPARTLRRRCELMWGLWPPVPLVDEVHHVVHVDGIHLHRDAVVLIAVAGGHVIGW HHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHEEECCEEEECCEEEEEEEECCCEEEE HVAKSEKAAAWQCLMARIAPPDVLVCDGGGGVLKAAKAMWPDTRIQRCLFHVQANILELT EECCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHC GRRPRLEAGGRLRRVALSLPRVGDAGGAAEWLVSYNQWEQDFHSFLDEKSEYADGGVNDM CCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH HQRLVKARRMIRRRIREGHLFTFLDEGLASVGPVPSTNNLVESWNARLRDMLRRHRGLRL HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH VRRLKAICWWCHQHTAHPETDAWLAANAMTDERLERLYRQAWERSPQGQYETFGIPARYG HHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCC TGIDWNEFHTRVEWQSND CCCCHHHHHCEEEECCCC >Mature Secondary Structure MNTPCCAVCGEPMKRNGRTSSGRIRWRCRNAGCGSSRTQSRDNSARDLRCGLDWLFSKQS CCCCCCHHCCCHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHH QAEHRLPARTLRRRCELMWGLWPPVPLVDEVHHVVHVDGIHLHRDAVVLIAVAGGHVIGW HHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHEEECCEEEECCEEEEEEEECCCEEEE HVAKSEKAAAWQCLMARIAPPDVLVCDGGGGVLKAAKAMWPDTRIQRCLFHVQANILELT EECCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHC GRRPRLEAGGRLRRVALSLPRVGDAGGAAEWLVSYNQWEQDFHSFLDEKSEYADGGVNDM CCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH HQRLVKARRMIRRRIREGHLFTFLDEGLASVGPVPSTNNLVESWNARLRDMLRRHRGLRL HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH VRRLKAICWWCHQHTAHPETDAWLAANAMTDERLERLYRQAWERSPQGQYETFGIPARYG HHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCC TGIDWNEFHTRVEWQSND CCCCHHHHHCEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA