| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is typA [H]
Identifier: 213691806
GI number: 213691806
Start: 1079081
End: 1081012
Strand: Direct
Name: typA [H]
Synonym: Blon_0914
Alternate gene names: 213691806
Gene position: 1079081-1081012 (Clockwise)
Preceding gene: 213691805
Following gene: 213691808
Centisome position: 38.09
GC content: 65.27
Gene sequence:
>1932_bases ATGGCGGTTCGTGGAGATATCCGTAATGTGGCGATTGTGGCTCACGTCGATCACGGCAAGACCACCCTGGTCAATGCCAT GCTTCAGCAGTCGCACGTGTTTTCCGAGCGTGAGGAAGTGCCGGATCGTGTGATGGATTCCAACGATCTGGAACGCGAGA AGGGCATCACCATCCTCGCCAAGAACACGGCCGTGGAATACACCGGTCCGCTGGCCGCCAAGTACGGCCACCCGGAGGGC ATCACCCTCAACATCATCGACACCCCCGGCCACGCCGACTTCGGTGGCGAGGTCGAGCGCGGCATCTCCATGGTCGACGG CGTCGTGCTGCTCGTGGACGCCTCCGAAGGCCCGCTGCCGCAGACCCGATTCGTGCTGCGCAAGGCCCTGGAGGCCAAGT TGCCGGTCATCCTGTGCGTGAACAAGGTCGACCGCCCCGACGCCCGTATCGAAGAGGTCGTCGGCGAAACCTCCGACCTG CTGCTCGGCCTGGCCGACGACGTGCAGCACGAGGGCATCGACCTGAACCTCGACCAGCTGCTGGAGATGCCGGTCATCTA CTGCGCCGCCAAGGCCGGCTACGCCTCCGTGAACCAGCCCGCCGACGGTGGCCTGCCAGACAACGACAACCTCGAGCCGC TGTTTGAGGCCATCATCTCCACCATCCCGGCCCCCGAATACGAGGAAGGCGCCCCGCTGCAGGCTCACGTGGCCAACATC GATTCCTCCGACTTCCTCGGCCGACTCGGTCTGGTCCGTATCTACAACGGCACCCTTGAGAAGGGCAAGACCTACGGCCT GTCCCGTGTGGACGGCTCCCTCGAGAACTTCCGCGTCTCCGAACTGCTGCGCACGCAGGGCCTCGAGCGCACCCCGGTCG AGTCCGCGGGCCCCGGCGACATCGTGGCCGTTGCCGGCGTTAACGACATCATGATCGGCGAGACCATCGTCGACCCCAAC GACCCGAAGCCGCTGCCGCTCATCCATGTGGACGATCCGGCCATCTCCATGACCTTCGGCACCAACGACTCCCCGCTGGC CGGCACCGAGGGCAAGGACCACAAGCTCACCGCCCGCATGATCAAGGATCGTCTGGACCGCGAGCTCATCGGCAACGTCT CCATCAAGGTGTTGCCCACCGACCGCCCCGACGCCTGGGAGGTCCAGGGCCGTGGCGAGCTGGCGCTGGCCGTGCTCGCC GAGCAGATGCGTCGCGAAGGCTACGAGCTGACCGTCGGCCGTCCGCAGGTGGTCACCAAGAAGATCGACGGCGTGGTCAA CGAGCCGATGGAAAACACCACCATCGACGTGCCAGAAGAGTACATGGGCACCGTCACCCAGCTCATGGCCGACCGCAAGG GACGCATGGATGGCATGACCAACCACGGCTCCGGCTGGGTCCGTCTGCAGTTCACCGTGCCGTCCCGTGGCCTGATCGGC TTCCGCACCGCGCTGCTCTCCGCCACTCGCGGCACCGGCATCTCCTCCTCCATCTCCGCCGGCTACGCGCCGTGGGCCGG CGCCATCACCATCCGTCAGAACGGTTCCATGGTTTCCGACCGCAAGGGTATCGCCACCCCATACGCCATGCAGCGTCTGC AGGCCCGTGGCAACTTCTTCGTCGAACCGCAGTCCCCGGTGTACGAGGGCCAGGTCGTGGGCGTGAACAACAAGCCCGAC GAGCTGGACGTGAACATCACGCTGGCCAAGCATATGACCAACATGCGTTCCTCCACCGCCGACGTGCTGGAGACCCTGAC CCCGCCGATCAAGATGAGCCTTGAGGAGTCCCTGGACTTCGCCAACGAGGACGAGTGCGTGGAGGTCACCCCGGAGTCCA TCCGCGTGCGCAAGATCATCCTCGGCCGTGAGGACTGGTACAAGTGGCGCGCCAAGCAGCGCCGCCAGAACGCCGCGCAG CAGGGTAAGTAA
Upstream 100 bases:
>100_bases GTGTGCAGGTATACATAACACCTCAGAGTAGATACTCAAGTACTCGAGAACGCAAGTACCGAACGATTACGCAAAAGAAT CAGCATTAAGAGAGGTTTCG
Downstream 100 bases:
>100_bases TCTGGTGCGGCTGTAGCCACCATTCTCTCTAGCTCCCCTCTCTGAGGGGAGCTAAGTTATAAGAGTTTACGGGTGGAAGG TTGGATGCTCAAACGTCCAA
Product: GTP-binding protein TypA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 643; Mature: 642
Protein sequence:
>643_residues MAVRGDIRNVAIVAHVDHGKTTLVNAMLQQSHVFSEREEVPDRVMDSNDLEREKGITILAKNTAVEYTGPLAAKYGHPEG ITLNIIDTPGHADFGGEVERGISMVDGVVLLVDASEGPLPQTRFVLRKALEAKLPVILCVNKVDRPDARIEEVVGETSDL LLGLADDVQHEGIDLNLDQLLEMPVIYCAAKAGYASVNQPADGGLPDNDNLEPLFEAIISTIPAPEYEEGAPLQAHVANI DSSDFLGRLGLVRIYNGTLEKGKTYGLSRVDGSLENFRVSELLRTQGLERTPVESAGPGDIVAVAGVNDIMIGETIVDPN DPKPLPLIHVDDPAISMTFGTNDSPLAGTEGKDHKLTARMIKDRLDRELIGNVSIKVLPTDRPDAWEVQGRGELALAVLA EQMRREGYELTVGRPQVVTKKIDGVVNEPMENTTIDVPEEYMGTVTQLMADRKGRMDGMTNHGSGWVRLQFTVPSRGLIG FRTALLSATRGTGISSSISAGYAPWAGAITIRQNGSMVSDRKGIATPYAMQRLQARGNFFVEPQSPVYEGQVVGVNNKPD ELDVNITLAKHMTNMRSSTADVLETLTPPIKMSLEESLDFANEDECVEVTPESIRVRKIILGREDWYKWRAKQRRQNAAQ QGK
Sequences:
>Translated_643_residues MAVRGDIRNVAIVAHVDHGKTTLVNAMLQQSHVFSEREEVPDRVMDSNDLEREKGITILAKNTAVEYTGPLAAKYGHPEG ITLNIIDTPGHADFGGEVERGISMVDGVVLLVDASEGPLPQTRFVLRKALEAKLPVILCVNKVDRPDARIEEVVGETSDL LLGLADDVQHEGIDLNLDQLLEMPVIYCAAKAGYASVNQPADGGLPDNDNLEPLFEAIISTIPAPEYEEGAPLQAHVANI DSSDFLGRLGLVRIYNGTLEKGKTYGLSRVDGSLENFRVSELLRTQGLERTPVESAGPGDIVAVAGVNDIMIGETIVDPN DPKPLPLIHVDDPAISMTFGTNDSPLAGTEGKDHKLTARMIKDRLDRELIGNVSIKVLPTDRPDAWEVQGRGELALAVLA EQMRREGYELTVGRPQVVTKKIDGVVNEPMENTTIDVPEEYMGTVTQLMADRKGRMDGMTNHGSGWVRLQFTVPSRGLIG FRTALLSATRGTGISSSISAGYAPWAGAITIRQNGSMVSDRKGIATPYAMQRLQARGNFFVEPQSPVYEGQVVGVNNKPD ELDVNITLAKHMTNMRSSTADVLETLTPPIKMSLEESLDFANEDECVEVTPESIRVRKIILGREDWYKWRAKQRRQNAAQ QGK >Mature_642_residues AVRGDIRNVAIVAHVDHGKTTLVNAMLQQSHVFSEREEVPDRVMDSNDLEREKGITILAKNTAVEYTGPLAAKYGHPEGI TLNIIDTPGHADFGGEVERGISMVDGVVLLVDASEGPLPQTRFVLRKALEAKLPVILCVNKVDRPDARIEEVVGETSDLL LGLADDVQHEGIDLNLDQLLEMPVIYCAAKAGYASVNQPADGGLPDNDNLEPLFEAIISTIPAPEYEEGAPLQAHVANID SSDFLGRLGLVRIYNGTLEKGKTYGLSRVDGSLENFRVSELLRTQGLERTPVESAGPGDIVAVAGVNDIMIGETIVDPND PKPLPLIHVDDPAISMTFGTNDSPLAGTEGKDHKLTARMIKDRLDRELIGNVSIKVLPTDRPDAWEVQGRGELALAVLAE QMRREGYELTVGRPQVVTKKIDGVVNEPMENTTIDVPEEYMGTVTQLMADRKGRMDGMTNHGSGWVRLQFTVPSRGLIGF RTALLSATRGTGISSSISAGYAPWAGAITIRQNGSMVSDRKGIATPYAMQRLQARGNFFVEPQSPVYEGQVVGVNNKPDE LDVNITLAKHMTNMRSSTADVLETLTPPIKMSLEESLDFANEDECVEVTPESIRVRKIILGREDWYKWRAKQRRQNAAQQ GK
Specific function: Not known; probably interacts with the ribosomes in a GTP dependent manner [H]
COG id: COG1217
COG function: function code T; Predicted membrane GTPase involved in stress response
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. TypA subfamily [H]
Homologues:
Organism=Homo sapiens, GI157426893, Length=536, Percent_Identity=25.7462686567164, Blast_Score=129, Evalue=1e-29, Organism=Homo sapiens, GI94966754, Length=141, Percent_Identity=39.0070921985816, Blast_Score=109, Evalue=7e-24, Organism=Homo sapiens, GI18390331, Length=144, Percent_Identity=40.2777777777778, Blast_Score=97, Evalue=5e-20, Organism=Homo sapiens, GI4503483, Length=154, Percent_Identity=34.4155844155844, Blast_Score=95, Evalue=2e-19, Organism=Homo sapiens, GI217272892, Length=142, Percent_Identity=36.6197183098592, Blast_Score=94, Evalue=3e-19, Organism=Homo sapiens, GI217272894, Length=142, Percent_Identity=36.6197183098592, Blast_Score=94, Evalue=3e-19, Organism=Homo sapiens, GI310132016, Length=118, Percent_Identity=36.4406779661017, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI310110807, Length=118, Percent_Identity=36.4406779661017, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI310123363, Length=118, Percent_Identity=36.4406779661017, Blast_Score=85, Evalue=2e-16, Organism=Homo sapiens, GI25306283, Length=152, Percent_Identity=36.1842105263158, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI19923640, Length=152, Percent_Identity=36.1842105263158, Blast_Score=82, Evalue=2e-15, Organism=Homo sapiens, GI25306287, Length=152, Percent_Identity=36.1842105263158, Blast_Score=81, Evalue=2e-15, Organism=Homo sapiens, GI34147630, Length=268, Percent_Identity=30.2238805970149, Blast_Score=74, Evalue=6e-13, Organism=Homo sapiens, GI53729339, Length=147, Percent_Identity=31.2925170068027, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI53729337, Length=147, Percent_Identity=31.2925170068027, Blast_Score=70, Evalue=4e-12, Organism=Homo sapiens, GI94966752, Length=88, Percent_Identity=42.0454545454545, Blast_Score=70, Evalue=6e-12, Organism=Escherichia coli, GI48994988, Length=634, Percent_Identity=43.6908517350158, Blast_Score=525, Evalue=1e-150, Organism=Escherichia coli, GI1788922, Length=514, Percent_Identity=27.8210116731518, Blast_Score=147, Evalue=2e-36, Organism=Escherichia coli, GI1789738, Length=156, Percent_Identity=41.025641025641, Blast_Score=98, Evalue=2e-21, Organism=Escherichia coli, GI1790412, Length=140, Percent_Identity=35.7142857142857, Blast_Score=72, Evalue=9e-14, Organism=Escherichia coli, GI1789737, Length=140, Percent_Identity=35.7142857142857, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1790835, Length=144, Percent_Identity=27.7777777777778, Blast_Score=63, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17557151, Length=580, Percent_Identity=25.6896551724138, Blast_Score=134, Evalue=1e-31, Organism=Caenorhabditis elegans, GI17552882, Length=140, Percent_Identity=36.4285714285714, Blast_Score=102, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17556745, Length=151, Percent_Identity=37.0860927152318, Blast_Score=98, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71988811, Length=180, Percent_Identity=33.8888888888889, Blast_Score=97, Evalue=2e-20, Organism=Caenorhabditis elegans, GI71988819, Length=139, Percent_Identity=37.410071942446, Blast_Score=97, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17533571, Length=147, Percent_Identity=39.4557823129252, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17506493, Length=164, Percent_Identity=32.9268292682927, Blast_Score=91, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17556456, Length=155, Percent_Identity=34.1935483870968, Blast_Score=75, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6323320, Length=540, Percent_Identity=27.5925925925926, Blast_Score=132, Evalue=2e-31, Organism=Saccharomyces cerevisiae, GI6324707, Length=147, Percent_Identity=35.3741496598639, Blast_Score=100, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6320593, Length=147, Percent_Identity=35.3741496598639, Blast_Score=100, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6323098, Length=144, Percent_Identity=40.9722222222222, Blast_Score=92, Evalue=3e-19, Organism=Saccharomyces cerevisiae, GI6324166, Length=143, Percent_Identity=40.5594405594406, Blast_Score=87, Evalue=8e-18, Organism=Saccharomyces cerevisiae, GI6322359, Length=152, Percent_Identity=32.8947368421053, Blast_Score=81, Evalue=6e-16, Organism=Saccharomyces cerevisiae, GI6324761, Length=258, Percent_Identity=29.4573643410853, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI78706572, Length=538, Percent_Identity=24.907063197026, Blast_Score=129, Evalue=9e-30, Organism=Drosophila melanogaster, GI28574573, Length=142, Percent_Identity=38.7323943661972, Blast_Score=101, Evalue=1e-21, Organism=Drosophila melanogaster, GI21357743, Length=140, Percent_Identity=40, Blast_Score=101, Evalue=2e-21, Organism=Drosophila melanogaster, GI24585709, Length=156, Percent_Identity=34.6153846153846, Blast_Score=97, Evalue=4e-20, Organism=Drosophila melanogaster, GI24585711, Length=156, Percent_Identity=34.6153846153846, Blast_Score=97, Evalue=4e-20, Organism=Drosophila melanogaster, GI24585713, Length=156, Percent_Identity=34.6153846153846, Blast_Score=97, Evalue=4e-20, Organism=Drosophila melanogaster, GI24582462, Length=144, Percent_Identity=40.2777777777778, Blast_Score=94, Evalue=3e-19, Organism=Drosophila melanogaster, GI221458488, Length=157, Percent_Identity=38.8535031847134, Blast_Score=82, Evalue=2e-15, Organism=Drosophila melanogaster, GI28572034, Length=314, Percent_Identity=26.4331210191083, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI19921738, Length=256, Percent_Identity=29.6875, Blast_Score=77, Evalue=4e-14, Organism=Drosophila melanogaster, GI281363316, Length=265, Percent_Identity=29.0566037735849, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI17864358, Length=265, Percent_Identity=29.0566037735849, Blast_Score=75, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR005225 - InterPro: IPR000640 - InterPro: IPR004161 - InterPro: IPR009000 - InterPro: IPR006298 [H]
Pfam domain/function: PF00679 EFG_C; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: NA
Molecular weight: Translated: 70160; Mature: 70028
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVRGDIRNVAIVAHVDHGKTTLVNAMLQQSHVFSEREEVPDRVMDSNDLEREKGITILA CCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCHHHCCCEEEE KNTAVEYTGPLAAKYGHPEGITLNIIDTPGHADFGGEVERGISMVDGVVLLVDASEGPLP ECCEEEECCCCHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCC QTRFVLRKALEAKLPVILCVNKVDRPDARIEEVVGETSDLLLGLADDVQHEGIDLNLDQL HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCHHHHEEECHHHHCCCCCCCCHHHH LEMPVIYCAAKAGYASVNQPADGGLPDNDNLEPLFEAIISTIPAPEYEEGAPLQAHVANI HHCCHHEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECC DSSDFLGRLGLVRIYNGTLEKGKTYGLSRVDGSLENFRVSELLRTQGLERTPVESAGPGD CCHHHHHHCCEEEEECCCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC IVAVAGVNDIMIGETIVDPNDPKPLPLIHVDDPAISMTFGTNDSPLAGTEGKDHKLTARM EEEECCCCEEEECCEEECCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHH IKDRLDRELIGNVSIKVLPTDRPDAWEVQGRGELALAVLAEQMRREGYELTVGRPQVVTK HHHHHHHHHHCCCEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHCCCEEECCCCHHHHH KIDGVVNEPMENTTIDVPEEYMGTVTQLMADRKGRMDGMTNHGSGWVRLQFTVPSRGLIG HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCHH FRTALLSATRGTGISSSISAGYAPWAGAITIRQNGSMVSDRKGIATPYAMQRLQARGNFF HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEECCCCCCCCHHHHHHHHHCCCEE VEPQSPVYEGQVVGVNNKPDELDVNITLAKHMTNMRSSTADVLETLTPPIKMSLEESLDF ECCCCCCCCCEEEECCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEECHHHHCCC ANEDECVEVTPESIRVRKIILGREDWYKWRAKQRRQNAAQQGK CCCCCEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AVRGDIRNVAIVAHVDHGKTTLVNAMLQQSHVFSEREEVPDRVMDSNDLEREKGITILA CCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCHHHCCCEEEE KNTAVEYTGPLAAKYGHPEGITLNIIDTPGHADFGGEVERGISMVDGVVLLVDASEGPLP ECCEEEECCCCHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCEEEEEECCCCCCC QTRFVLRKALEAKLPVILCVNKVDRPDARIEEVVGETSDLLLGLADDVQHEGIDLNLDQL HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHCCHHHHEEECHHHHCCCCCCCCHHHH LEMPVIYCAAKAGYASVNQPADGGLPDNDNLEPLFEAIISTIPAPEYEEGAPLQAHVANI HHCCHHEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECC DSSDFLGRLGLVRIYNGTLEKGKTYGLSRVDGSLENFRVSELLRTQGLERTPVESAGPGD CCHHHHHHCCEEEEECCCCCCCCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC IVAVAGVNDIMIGETIVDPNDPKPLPLIHVDDPAISMTFGTNDSPLAGTEGKDHKLTARM EEEECCCCEEEECCEEECCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHH IKDRLDRELIGNVSIKVLPTDRPDAWEVQGRGELALAVLAEQMRREGYELTVGRPQVVTK HHHHHHHHHHCCCEEEEEECCCCCCEEECCCCCCHHHHHHHHHHHCCCEEECCCCHHHHH KIDGVVNEPMENTTIDVPEEYMGTVTQLMADRKGRMDGMTNHGSGWVRLQFTVPSRGLIG HHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCHH FRTALLSATRGTGISSSISAGYAPWAGAITIRQNGSMVSDRKGIATPYAMQRLQARGNFF HHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEECCCCCCCCHHHHHHHHHCCCEE VEPQSPVYEGQVVGVNNKPDELDVNITLAKHMTNMRSSTADVLETLTPPIKMSLEESLDF ECCCCCCCCCEEEECCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCEECHHHHCCC ANEDECVEVTPESIRVRKIILGREDWYKWRAKQRRQNAAQQGK CCCCCEEEECCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]