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The map label for this gene is xylR [H]

Identifier: 213691770

GI number: 213691770

Start: 1036948

End: 1038162

Strand: Reverse

Name: xylR [H]

Synonym: Blon_0878

Alternate gene names: 213691770

Gene position: 1038162-1036948 (Counterclockwise)

Preceding gene: 213691772

Following gene: 213691769

Centisome position: 36.65

GC content: 62.06

Gene sequence:

>1215_bases
ATGGCAACAAACACCGCCCATGCCACTTCCCAGGCCAGTGTCTCCGAATCCAACCGCTCCCGCATCGTCAAGCACCTGTA
TCACAACGGCATCAGCTCCCGCGCGCAAATCGCCAAGGCACTGGAACTCACCCCCGCGGCCATCACCAAAATCACCGCAC
GCCTTATCGAGGCCGGTATGATTGAAGAGACCGGCGATTTGGAAGGCTCCAAGAACCGCCGTTCCATCGGTCTCAAACTC
GACACCACGCGGTTCCGCATCATCGGCATCAAATTCGCCCGCTCGCTGGTGCAGATCGGCGTGTTCGACCTGTGCGGCAA
CACCCTGAGCTTCGAAAACCTGCCCACGGTGTACGACAACACCATCAACGACACCATCGTCACCATCCACCAGCGCGTCG
AACAATTGCTCGACAACGACCCGTCCATCGTGGCCATCGGCATGGCGGTGCCCGGCCCCTATCTGCGTAACGTAGGCCGC
ACCGCCGTGGTGTCCAGCATGCAGGGCTGGCGCAAAATCAACTTCATCGACGAATTCGCCACCGCTTTCCGCGTGCCTGT
ATTCATCGAACAGGACGCCCGCGCCGGCGCCCTCGCACATTATCTCTTCGACCCGTCGGTGCACGCCGACGGCAACCTCG
CCTATTATCTGGTCGGCGAAGGCGTGGGCCTCGGCGTCATCGACAACGGTCGCCTCATCAACGGCTTCCTCGGTGCCGCC
ACCGAAATCGGACACATCTCCATCGACGTCAACGGCCGCCCCTGCGATTGCGGCAACGTCGGCTGCCTTGAACGCTACTG
CTCCACCCCCGCCATTCACGACATGCTCATCGCCGATGGCACCGTGGTTCCCGGCGCGGCCGATATGACCAACACCGCAG
CCGCCCGCGCCCTGTTCGCCAAAGCCGGCGACGGCGACGAAGCGGCAATCGCCATTGTCCGCGAAGTCGCCCAATATGTC
GGCTACGGATGCGTCACCATCTTCAACGGATACAATCCCGAGCACATCATCATCGGCGACATCGTGGCCGAAGCCGGCCC
GATACTGCTCGATGAGGTGCGCGCCACGGTGGCCGAACGGGCCATCCCCGAAATCAATGCCTCCACTTCCATCAGCCTAT
CCACCCTGTCCGCCGACGCGGCGGTCTCCGGTGCCGCAGCAGTGGCGGTGACCCAATTCCTCGAACACCCCTCAGTATTC
TTCGATGTCTCCTAA

Upstream 100 bases:

>100_bases
TTGCGTCAATTAATTAACAGCGTTAATATCTTAATCAAGTTCAGATTCAAAGACGAGCGGAACAACTCGCAGCGGTGCAG
ACAAGGAGGACTTAAGACCG

Downstream 100 bases:

>100_bases
AACAAACGCCGACATCACAAGATTTTCCATACGAAACACCCGATAAAGGAAACAAAGGAAAGGAACCAACCATGACTACC
CCGATCGTTCTGAGCCTCGG

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 404; Mature: 403

Protein sequence:

>404_residues
MATNTAHATSQASVSESNRSRIVKHLYHNGISSRAQIAKALELTPAAITKITARLIEAGMIEETGDLEGSKNRRSIGLKL
DTTRFRIIGIKFARSLVQIGVFDLCGNTLSFENLPTVYDNTINDTIVTIHQRVEQLLDNDPSIVAIGMAVPGPYLRNVGR
TAVVSSMQGWRKINFIDEFATAFRVPVFIEQDARAGALAHYLFDPSVHADGNLAYYLVGEGVGLGVIDNGRLINGFLGAA
TEIGHISIDVNGRPCDCGNVGCLERYCSTPAIHDMLIADGTVVPGAADMTNTAAARALFAKAGDGDEAAIAIVREVAQYV
GYGCVTIFNGYNPEHIIIGDIVAEAGPILLDEVRATVAERAIPEINASTSISLSTLSADAAVSGAAAVAVTQFLEHPSVF
FDVS

Sequences:

>Translated_404_residues
MATNTAHATSQASVSESNRSRIVKHLYHNGISSRAQIAKALELTPAAITKITARLIEAGMIEETGDLEGSKNRRSIGLKL
DTTRFRIIGIKFARSLVQIGVFDLCGNTLSFENLPTVYDNTINDTIVTIHQRVEQLLDNDPSIVAIGMAVPGPYLRNVGR
TAVVSSMQGWRKINFIDEFATAFRVPVFIEQDARAGALAHYLFDPSVHADGNLAYYLVGEGVGLGVIDNGRLINGFLGAA
TEIGHISIDVNGRPCDCGNVGCLERYCSTPAIHDMLIADGTVVPGAADMTNTAAARALFAKAGDGDEAAIAIVREVAQYV
GYGCVTIFNGYNPEHIIIGDIVAEAGPILLDEVRATVAERAIPEINASTSISLSTLSADAAVSGAAAVAVTQFLEHPSVF
FDVS
>Mature_403_residues
ATNTAHATSQASVSESNRSRIVKHLYHNGISSRAQIAKALELTPAAITKITARLIEAGMIEETGDLEGSKNRRSIGLKLD
TTRFRIIGIKFARSLVQIGVFDLCGNTLSFENLPTVYDNTINDTIVTIHQRVEQLLDNDPSIVAIGMAVPGPYLRNVGRT
AVVSSMQGWRKINFIDEFATAFRVPVFIEQDARAGALAHYLFDPSVHADGNLAYYLVGEGVGLGVIDNGRLINGFLGAAT
EIGHISIDVNGRPCDCGNVGCLERYCSTPAIHDMLIADGTVVPGAADMTNTAAARALFAKAGDGDEAAIAIVREVAQYVG
YGCVTIFNGYNPEHIIIGDIVAEAGPILLDEVRATVAERAIPEINASTSISLSTLSADAAVSGAAAVAVTQFLEHPSVFF
DVS

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Homo sapiens, GI298566315, Length=242, Percent_Identity=25.6198347107438, Blast_Score=70, Evalue=3e-12,
Organism=Homo sapiens, GI298566325, Length=242, Percent_Identity=25.6198347107438, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI4885285, Length=242, Percent_Identity=25.6198347107438, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI190014632, Length=242, Percent_Identity=25.6198347107438, Blast_Score=70, Evalue=4e-12,
Organism=Escherichia coli, GI1786891, Length=385, Percent_Identity=28.3116883116883, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1787878, Length=390, Percent_Identity=25.3846153846154, Blast_Score=117, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 42887; Mature: 42756

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: PS01125 ROK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATNTAHATSQASVSESNRSRIVKHLYHNGISSRAQIAKALELTPAAITKITARLIEAGM
CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
IEETGDLEGSKNRRSIGLKLDTTRFRIIGIKFARSLVQIGVFDLCGNTLSFENLPTVYDN
CCCCCCCCCCCCCCEEEEEEECCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCC
TINDTIVTIHQRVEQLLDNDPSIVAIGMAVPGPYLRNVGRTAVVSSMQGWRKINFIDEFA
CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHCCHHHHHHHHHCCHHHHHHHHHH
TAFRVPVFIEQDARAGALAHYLFDPSVHADGNLAYYLVGEGVGLGVIDNGRLINGFLGAA
HHHCCCEEEECCCCCCHHHHHHCCCCCCCCCCEEEEEEECCCEEEEECCCCEEEHHHHCC
TEIGHISIDVNGRPCDCGNVGCLERYCSTPAIHDMLIADGTVVPGAADMTNTAAARALFA
CCCEEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHEECCEECCCCCCCHHHHHHHHHHH
KAGDGDEAAIAIVREVAQYVGYGCVTIFNGYNPEHIIIGDIVAEAGPILLDEVRATVAER
CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHH
AIPEINASTSISLSTLSADAAVSGAAAVAVTQFLEHPSVFFDVS
CCCCCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCEEEECC
>Mature Secondary Structure 
ATNTAHATSQASVSESNRSRIVKHLYHNGISSRAQIAKALELTPAAITKITARLIEAGM
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCC
IEETGDLEGSKNRRSIGLKLDTTRFRIIGIKFARSLVQIGVFDLCGNTLSFENLPTVYDN
CCCCCCCCCCCCCCEEEEEEECCEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCC
TINDTIVTIHQRVEQLLDNDPSIVAIGMAVPGPYLRNVGRTAVVSSMQGWRKINFIDEFA
CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHCCHHHHHHHHHCCHHHHHHHHHH
TAFRVPVFIEQDARAGALAHYLFDPSVHADGNLAYYLVGEGVGLGVIDNGRLINGFLGAA
HHHCCCEEEECCCCCCHHHHHHCCCCCCCCCCEEEEEEECCCEEEEECCCCEEEHHHHCC
TEIGHISIDVNGRPCDCGNVGCLERYCSTPAIHDMLIADGTVVPGAADMTNTAAARALFA
CCCEEEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHEECCEECCCCCCCHHHHHHHHHHH
KAGDGDEAAIAIVREVAQYVGYGCVTIFNGYNPEHIIIGDIVAEAGPILLDEVRATVAER
CCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEHHHHCCCCHHHHHHHHHHHHH
AIPEINASTSISLSTLSADAAVSGAAAVAVTQFLEHPSVFFDVS
CCCCCCCCCEEEEEEECCCHHHCCHHHHHHHHHHCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]