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The map label for this gene is xylR [H]

Identifier: 213691772

GI number: 213691772

Start: 1039444

End: 1040568

Strand: Reverse

Name: xylR [H]

Synonym: Blon_0880

Alternate gene names: 213691772

Gene position: 1040568-1039444 (Counterclockwise)

Preceding gene: 213691779

Following gene: 213691770

Centisome position: 36.73

GC content: 60.36

Gene sequence:

>1125_bases
ATGCCATATCTCGGTCTCAACACAACGACCGACGACCATGAGGCCAAGGCCTCCCCCGCCGATGTGCGCCGCAAGAACCG
CCAACTCATCTTCAGGTTGTTGTTCCCCACCAACCAGTATTCGCGCGCCGAGCTCGGCCGACGCACCGGATTGAGCCGCG
CGGCCGTTTCCGATGTGGTCGGTCAGATGCTGGAGGAAGGATTGCTGCGCGAGACCGGTCAGGCACCCAGCGGCGGCAAA
GGCAAACGAGGCACACTGCTGAGCATCGATACCGATCGGCTGCGCATCATCAGCATCGACCTGACGCAGGAGCACCTGCT
GCACGGTGCAGTCACCAATCTGCTCGGACAGCCGCTACGCCACGCCGAAGTCACCCTGAACACCGGCTCATTCGTTTCCG
TGGATGTGATCATCGAACTTATCGAGAAGATGCTGGGCATGTCCGACGGCGATGTCATCGGCATCGGAGTCTCCTCCCCC
GGCGTGGTAGACAACGGCGTGGTCCGCTCCTCCACGATGCGCGGCTGGAACAATCTCGACCTGTCCACACCGATCGCCGA
GCATTTTGGACTTGAAGTAAACGTCAGCAACGACGCCACCGCAGCCATGCTCACCGAACGTTTCTTCGGCCAAGGCGGGC
CGAATATGCTCTTCGTATGCATCGAAAGAGGCATCGGCTCGGCGATTCTGCTCTCGGACACGCCGGTAATCGGCGAACTG
CATGCAGCCGGCGAAATCGGCCATATTTCCATCGATCTTGATGGGCCGCTATGCCCTTGCGGCAAGCGCGGCTGCCTGGA
GACGATGATTTCCGGAACCGCATTGAAGAAGCAGCTCAGCACGGCAGACGTGGAGCAGCATCAGAATATCCTCGCTCGGG
CGGGCCGCTATCTCGGCCAGGCCCTGTCCATGCCTGTGGGCCTTTTGGATATGGCAGACGTATGCGTCTATGGGCAGCCG
AACATCATCAACGAGACGTTCGTTGACGCGGCCCAGAGATATCTGGATGCCGCCACGTCCTCGTCCTTCCACAAACACAC
GGTAATCCGGCGCTGCGAATGCGGACCCGACATCACCGTGCAGGGCGAGGCCATCGCCGCGGTCTTCCAACACTTGACCA
AATAA

Upstream 100 bases:

>100_bases
GTTTCATAACAATTTCAACGACGAAATTGTGCTTCACCGTCTAAACTGTGTACGGAACAACAATCACCGTCCATTCGCTC
GCCATCAGGCAGGAGGAAAC

Downstream 100 bases:

>100_bases
AAGCCGGTCACCCCGGCAACGAAACGCGCAAGACCAAGCGCGGCACAGCACGATATAAAGCGATATAGGACTGCGTGGAA
GATGGGGCCTCGGAGACAAA

Product: ROK family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MPYLGLNTTTDDHEAKASPADVRRKNRQLIFRLLFPTNQYSRAELGRRTGLSRAAVSDVVGQMLEEGLLRETGQAPSGGK
GKRGTLLSIDTDRLRIISIDLTQEHLLHGAVTNLLGQPLRHAEVTLNTGSFVSVDVIIELIEKMLGMSDGDVIGIGVSSP
GVVDNGVVRSSTMRGWNNLDLSTPIAEHFGLEVNVSNDATAAMLTERFFGQGGPNMLFVCIERGIGSAILLSDTPVIGEL
HAAGEIGHISIDLDGPLCPCGKRGCLETMISGTALKKQLSTADVEQHQNILARAGRYLGQALSMPVGLLDMADVCVYGQP
NIINETFVDAAQRYLDAATSSSFHKHTVIRRCECGPDITVQGEAIAAVFQHLTK

Sequences:

>Translated_374_residues
MPYLGLNTTTDDHEAKASPADVRRKNRQLIFRLLFPTNQYSRAELGRRTGLSRAAVSDVVGQMLEEGLLRETGQAPSGGK
GKRGTLLSIDTDRLRIISIDLTQEHLLHGAVTNLLGQPLRHAEVTLNTGSFVSVDVIIELIEKMLGMSDGDVIGIGVSSP
GVVDNGVVRSSTMRGWNNLDLSTPIAEHFGLEVNVSNDATAAMLTERFFGQGGPNMLFVCIERGIGSAILLSDTPVIGEL
HAAGEIGHISIDLDGPLCPCGKRGCLETMISGTALKKQLSTADVEQHQNILARAGRYLGQALSMPVGLLDMADVCVYGQP
NIINETFVDAAQRYLDAATSSSFHKHTVIRRCECGPDITVQGEAIAAVFQHLTK
>Mature_373_residues
PYLGLNTTTDDHEAKASPADVRRKNRQLIFRLLFPTNQYSRAELGRRTGLSRAAVSDVVGQMLEEGLLRETGQAPSGGKG
KRGTLLSIDTDRLRIISIDLTQEHLLHGAVTNLLGQPLRHAEVTLNTGSFVSVDVIIELIEKMLGMSDGDVIGIGVSSPG
VVDNGVVRSSTMRGWNNLDLSTPIAEHFGLEVNVSNDATAAMLTERFFGQGGPNMLFVCIERGIGSAILLSDTPVIGELH
AAGEIGHISIDLDGPLCPCGKRGCLETMISGTALKKQLSTADVEQHQNILARAGRYLGQALSMPVGLLDMADVCVYGQPN
IINETFVDAAQRYLDAATSSSFHKHTVIRRCECGPDITVQGEAIAAVFQHLTK

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Homo sapiens, GI190014632, Length=133, Percent_Identity=39.0977443609023, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI4885285, Length=133, Percent_Identity=39.0977443609023, Blast_Score=85, Evalue=9e-17,
Organism=Homo sapiens, GI298566315, Length=133, Percent_Identity=39.0977443609023, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI298566325, Length=133, Percent_Identity=39.0977443609023, Blast_Score=85, Evalue=1e-16,
Organism=Escherichia coli, GI1786891, Length=372, Percent_Identity=22.5806451612903, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787878, Length=270, Percent_Identity=24.0740740740741, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI87082127, Length=271, Percent_Identity=23.9852398523985, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 40151; Mature: 40020

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS01125 ROK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYLGLNTTTDDHEAKASPADVRRKNRQLIFRLLFPTNQYSRAELGRRTGLSRAAVSDVV
CCCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHH
GQMLEEGLLRETGQAPSGGKGKRGTLLSIDTDRLRIISIDLTQEHLLHGAVTNLLGQPLR
HHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCC
HAEVTLNTGSFVSVDVIIELIEKMLGMSDGDVIGIGVSSPGVVDNGVVRSSTMRGWNNLD
CCEEEECCCCEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEHHHHCCCCCCC
LSTPIAEHFGLEVNVSNDATAAMLTERFFGQGGPNMLFVCIERGIGSAILLSDTPVIGEL
CCCCHHHHCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCEEEH
HAAGEIGHISIDLDGPLCPCGKRGCLETMISGTALKKQLSTADVEQHQNILARAGRYLGQ
HCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSMPVGLLDMADVCVYGQPNIINETFVDAAQRYLDAATSSSFHKHTVIRRCECGPDITV
HHCCCCCHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEE
QGEAIAAVFQHLTK
CCHHHHHHHHHHCC
>Mature Secondary Structure 
PYLGLNTTTDDHEAKASPADVRRKNRQLIFRLLFPTNQYSRAELGRRTGLSRAAVSDVV
CCCCCCCCCCCCCCCCCCHHHHHHHHHEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHH
GQMLEEGLLRETGQAPSGGKGKRGTLLSIDTDRLRIISIDLTQEHLLHGAVTNLLGQPLR
HHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHHCCCCC
HAEVTLNTGSFVSVDVIIELIEKMLGMSDGDVIGIGVSSPGVVDNGVVRSSTMRGWNNLD
CCEEEECCCCEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEHHHHCCCCCCC
LSTPIAEHFGLEVNVSNDATAAMLTERFFGQGGPNMLFVCIERGIGSAILLSDTPVIGEL
CCCCHHHHCCCEEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEECCCCEEEH
HAAGEIGHISIDLDGPLCPCGKRGCLETMISGTALKKQLSTADVEQHQNILARAGRYLGQ
HCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALSMPVGLLDMADVCVYGQPNIINETFVDAAQRYLDAATSSSFHKHTVIRRCECGPDITV
HHCCCCCHHHHHHEEECCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCEEE
QGEAIAAVFQHLTK
CCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]