| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is groEL [H]
Identifier: 213691590
GI number: 213691590
Start: 796166
End: 797791
Strand: Direct
Name: groEL [H]
Synonym: Blon_0694
Alternate gene names: 213691590
Gene position: 796166-797791 (Clockwise)
Preceding gene: 213691589
Following gene: 213691592
Centisome position: 28.11
GC content: 64.08
Gene sequence:
>1626_bases ATGGCAAAGATCATCTCTTATGATGAGGAAGCCCGTCAGGGCATGCTGGAGGGCCTTGACAAGCTCGCCAACACCGTCAA GGTCACCTTGGGCCCGAAGGGCCGCAACGTCGTGCTCGACAAGACCTACGGCGCTCCGACCATCACCAACGATGGTGTGT CCATCGCCAAGGAAATCGACCTTGAAGACCCGTACGAGCGCATCGGCGCCGAGCTGGTCAAGGAAGTCGCCAAGAAGACC GACGACGTCGCCGGTGACGGCACCACCACTGCGACCGTGCTTGCTCAGTCCCTGGTTCACGAGGGTCTGAAGAACGTGGT CGCCGGCTCCAACCCGATCGCCCTGCGTCGCGGCATCGAGAAGGCCACCGAGGTCATCGTCAAGGAACTCGTCGCTGCCG CCAAGGACGTCGAGACCAAGGACCAGATCGCCGCTACCGCCACCATCTCCGCCGCCGACCCTGAGGTCGGCGAGAAGATC GCTGAGGCTCTGGACAAGGTCGGCCAGGACGGCGTTGTGACCGTTGAAGACAACAACCGCTTCGGCCTGGACCTCGACTT CACCGAGGGCATGCGTTTCGACAAGGGCTACATCGCCCCGTACTTCGTCACCAACGCTGACGACCAGACCGCAGTGCTCG AAGATCCGTACATTCTGCTGACCTCCGGCAAGGTCTCCTCCCAGCAGGACATCGTGCACGTGGCCGAGCTGGTCATGAAG ACCGGCAAGCCGCTGCTGATCATCGCTGAGGACGTCGATGGCGAAGCACTGCCGACCCTGATCCTGAACAACATCCGTGG CACCTTCAAGTCCTGCGCCGTCAAGGCCCCGGGCTTTGGCGACCGTCGCAAGGCCATGCTGCAGGATATGGCCATCCTGA CCGGTGCTCAGGTTGTCTCCGACGAACTGGGCCTGAAGCTCGAGTCCGTCGACACCTCCGTGCTCGGCCATGCCAAGAAG GTCATCGTCTCCAAGGACGAGACCACCATCGTTCAGGGCGCTGGCTCCAAGGAAGACATCGACGCTCGCGTGGCCCAGAT CCGCGCTGAGATCGAGAACACCGACTCCGATTACGACCGTGAGAAGCTGCAGGAGCGTCTGGCCAAGCTGGCCGGCGGCG TGGCTGTCATCAAGGTCGGCGCTGCCACCGAGGTTGAGGCCAAGGAGCGCAAGCACCGCATCGAAGATGCCGTGCGTAAC GCCAAGGCCGCCATCGAGGAAGGCCTGCTGCCCGGCGGTGGCGTGGCCCTCGTTCAGGCTGCTGCCAAGGCCGAGAAGGC TGAGGCCGTCACCTCCCTGACCGGCGAAGAGGCTACCGGTGCCGCCATCGTGTTCCGCGCCATCGAGGCCCCGATCAAGC AGATCGCCGAGAACGCCGGCGTGTCCGGTGACGTGGTCATCAACACCGTCCGCTCCCTGCCTGATGGCGAAGGCTTCAAC GCCGCCACCGACACCTACGAAGACCTGCTGGCCGCCGGTGTGACCGACCCGGTCAAGGTGACCCGCTCCGCTCTGCAGAA CGCCGCCTCCATCGCTGGTCTGTTCCTGACCACCGAGGCCGTCGTTGCCAACAAGCCAGAGCCGAAGCCTGCTGCCCCGG CCGCCGGTGCCGACATGGGCTACTGA
Upstream 100 bases:
>100_bases GAGGTCGAGAGTGATAATCGACAGCTGACGGCTGGTCGTCACGACTCGACGCTTGCGAGTGATAACCGGTATACCTAGCC ATTTGGAGGAATACGCAACC
Downstream 100 bases:
>100_bases TCCGCAAACGATCGCTAGCTGATTGAGCTGAAAGGGGATTCCTTCGGGAGTCCCCTTTTTTGTATTCTGGTTCCCCTCTT TGAGGGGAGCTGTCGAACGC
Product: chaperonin GroEL
Products: NA
Alternate protein names: GroEL protein; Protein Cpn60 [H]
Number of amino acids: Translated: 541; Mature: 540
Protein sequence:
>541_residues MAKIISYDEEARQGMLEGLDKLANTVKVTLGPKGRNVVLDKTYGAPTITNDGVSIAKEIDLEDPYERIGAELVKEVAKKT DDVAGDGTTTATVLAQSLVHEGLKNVVAGSNPIALRRGIEKATEVIVKELVAAAKDVETKDQIAATATISAADPEVGEKI AEALDKVGQDGVVTVEDNNRFGLDLDFTEGMRFDKGYIAPYFVTNADDQTAVLEDPYILLTSGKVSSQQDIVHVAELVMK TGKPLLIIAEDVDGEALPTLILNNIRGTFKSCAVKAPGFGDRRKAMLQDMAILTGAQVVSDELGLKLESVDTSVLGHAKK VIVSKDETTIVQGAGSKEDIDARVAQIRAEIENTDSDYDREKLQERLAKLAGGVAVIKVGAATEVEAKERKHRIEDAVRN AKAAIEEGLLPGGGVALVQAAAKAEKAEAVTSLTGEEATGAAIVFRAIEAPIKQIAENAGVSGDVVINTVRSLPDGEGFN AATDTYEDLLAAGVTDPVKVTRSALQNAASIAGLFLTTEAVVANKPEPKPAAPAAGADMGY
Sequences:
>Translated_541_residues MAKIISYDEEARQGMLEGLDKLANTVKVTLGPKGRNVVLDKTYGAPTITNDGVSIAKEIDLEDPYERIGAELVKEVAKKT DDVAGDGTTTATVLAQSLVHEGLKNVVAGSNPIALRRGIEKATEVIVKELVAAAKDVETKDQIAATATISAADPEVGEKI AEALDKVGQDGVVTVEDNNRFGLDLDFTEGMRFDKGYIAPYFVTNADDQTAVLEDPYILLTSGKVSSQQDIVHVAELVMK TGKPLLIIAEDVDGEALPTLILNNIRGTFKSCAVKAPGFGDRRKAMLQDMAILTGAQVVSDELGLKLESVDTSVLGHAKK VIVSKDETTIVQGAGSKEDIDARVAQIRAEIENTDSDYDREKLQERLAKLAGGVAVIKVGAATEVEAKERKHRIEDAVRN AKAAIEEGLLPGGGVALVQAAAKAEKAEAVTSLTGEEATGAAIVFRAIEAPIKQIAENAGVSGDVVINTVRSLPDGEGFN AATDTYEDLLAAGVTDPVKVTRSALQNAASIAGLFLTTEAVVANKPEPKPAAPAAGADMGY >Mature_540_residues AKIISYDEEARQGMLEGLDKLANTVKVTLGPKGRNVVLDKTYGAPTITNDGVSIAKEIDLEDPYERIGAELVKEVAKKTD DVAGDGTTTATVLAQSLVHEGLKNVVAGSNPIALRRGIEKATEVIVKELVAAAKDVETKDQIAATATISAADPEVGEKIA EALDKVGQDGVVTVEDNNRFGLDLDFTEGMRFDKGYIAPYFVTNADDQTAVLEDPYILLTSGKVSSQQDIVHVAELVMKT GKPLLIIAEDVDGEALPTLILNNIRGTFKSCAVKAPGFGDRRKAMLQDMAILTGAQVVSDELGLKLESVDTSVLGHAKKV IVSKDETTIVQGAGSKEDIDARVAQIRAEIENTDSDYDREKLQERLAKLAGGVAVIKVGAATEVEAKERKHRIEDAVRNA KAAIEEGLLPGGGVALVQAAAKAEKAEAVTSLTGEEATGAAIVFRAIEAPIKQIAENAGVSGDVVINTVRSLPDGEGFNA ATDTYEDLLAAGVTDPVKVTRSALQNAASIAGLFLTTEAVVANKPEPKPAAPAAGADMGY
Specific function: Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions [H]
COG id: COG0459
COG function: function code O; Chaperonin GroEL (HSP60 family)
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the chaperonin (HSP60) family [H]
Homologues:
Organism=Homo sapiens, GI41399285, Length=528, Percent_Identity=44.3181818181818, Blast_Score=445, Evalue=1e-125, Organism=Homo sapiens, GI31542947, Length=528, Percent_Identity=44.3181818181818, Blast_Score=445, Evalue=1e-125, Organism=Homo sapiens, GI24307939, Length=242, Percent_Identity=26.8595041322314, Blast_Score=70, Evalue=4e-12, Organism=Escherichia coli, GI1790586, Length=530, Percent_Identity=55.4716981132075, Blast_Score=559, Evalue=1e-160, Organism=Caenorhabditis elegans, GI17555558, Length=529, Percent_Identity=44.9905482041588, Blast_Score=451, Evalue=1e-127, Organism=Caenorhabditis elegans, GI193210679, Length=211, Percent_Identity=41.2322274881517, Blast_Score=162, Evalue=5e-40, Organism=Caenorhabditis elegans, GI25144674, Length=158, Percent_Identity=31.0126582278481, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323288, Length=527, Percent_Identity=46.8690702087287, Blast_Score=464, Evalue=1e-131, Organism=Saccharomyces cerevisiae, GI6322524, Length=183, Percent_Identity=28.4153005464481, Blast_Score=80, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6322350, Length=551, Percent_Identity=21.4156079854809, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI24641193, Length=528, Percent_Identity=45.4545454545455, Blast_Score=461, Evalue=1e-130, Organism=Drosophila melanogaster, GI24641191, Length=528, Percent_Identity=45.4545454545455, Blast_Score=461, Evalue=1e-130, Organism=Drosophila melanogaster, GI45550936, Length=527, Percent_Identity=42.8842504743833, Blast_Score=434, Evalue=1e-122, Organism=Drosophila melanogaster, GI45550132, Length=527, Percent_Identity=42.8842504743833, Blast_Score=434, Evalue=1e-122, Organism=Drosophila melanogaster, GI45550935, Length=527, Percent_Identity=42.8842504743833, Blast_Score=434, Evalue=1e-122, Organism=Drosophila melanogaster, GI17864606, Length=526, Percent_Identity=37.8326996197719, Blast_Score=377, Evalue=1e-105, Organism=Drosophila melanogaster, GI24584129, Length=537, Percent_Identity=32.9608938547486, Blast_Score=270, Evalue=2e-72, Organism=Drosophila melanogaster, GI19921262, Length=537, Percent_Identity=32.9608938547486, Blast_Score=270, Evalue=2e-72, Organism=Drosophila melanogaster, GI28571140, Length=155, Percent_Identity=31.6129032258064, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI18858175, Length=155, Percent_Identity=31.6129032258064, Blast_Score=69, Evalue=7e-12, Organism=Drosophila melanogaster, GI17647245, Length=191, Percent_Identity=31.413612565445, Blast_Score=66, Evalue=7e-11,
Paralogues:
None
Copy number: 2180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 480 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 15012 Molecules/Cell In: Growth Phase,
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018370 - InterPro: IPR001844 - InterPro: IPR002423 [H]
Pfam domain/function: PF00118 Cpn60_TCP1 [H]
EC number: NA
Molecular weight: Translated: 56818; Mature: 56687
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: PS00296 CHAPERONINS_CPN60
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKIISYDEEARQGMLEGLDKLANTVKVTLGPKGRNVVLDKTYGAPTITNDGVSIAKEID CCCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHCC LEDPYERIGAELVKEVAKKTDDVAGDGTTTATVLAQSLVHEGLKNVVAGSNPIALRRGIE CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH KATEVIVKELVAAAKDVETKDQIAATATISAADPEVGEKIAEALDKVGQDGVVTVEDNNR HHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCE FGLDLDFTEGMRFDKGYIAPYFVTNADDQTAVLEDPYILLTSGKVSSQQDIVHVAELVMK EEEEEEHHCCCCCCCCCCCEEEEECCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHH TGKPLLIIAEDVDGEALPTLILNNIRGTFKSCAVKAPGFGDRRKAMLQDMAILTGAQVVS CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHH DELGLKLESVDTSVLGHAKKVIVSKDETTIVQGAGSKEDIDARVAQIRAEIENTDSDYDR HHHCCEEHHCCHHHHHHHHHEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHH EKLQERLAKLAGGVAVIKVGAATEVEAKERKHRIEDAVRNAKAAIEEGLLPGGGVALVQA HHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH AAKAEKAEAVTSLTGEEATGAAIVFRAIEAPIKQIAENAGVSGDVVINTVRSLPDGEGFN HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCC AATDTYEDLLAAGVTDPVKVTRSALQNAASIAGLFLTTEAVVANKPEPKPAAPAAGADMG CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC Y C >Mature Secondary Structure AKIISYDEEARQGMLEGLDKLANTVKVTLGPKGRNVVLDKTYGAPTITNDGVSIAKEID CCCCCCCHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECCCCCCCCCCCCCHHHHHCC LEDPYERIGAELVKEVAKKTDDVAGDGTTTATVLAQSLVHEGLKNVVAGSNPIALRRGIE CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH KATEVIVKELVAAAKDVETKDQIAATATISAADPEVGEKIAEALDKVGQDGVVTVEDNNR HHHHHHHHHHHHHHHCCCCHHHHHEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCE FGLDLDFTEGMRFDKGYIAPYFVTNADDQTAVLEDPYILLTSGKVSSQQDIVHVAELVMK EEEEEEHHCCCCCCCCCCCEEEEECCCCCEEEECCCEEEEECCCCCCHHHHHHHHHHHHH TGKPLLIIAEDVDGEALPTLILNNIRGTFKSCAVKAPGFGDRRKAMLQDMAILTGAQVVS CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHH DELGLKLESVDTSVLGHAKKVIVSKDETTIVQGAGSKEDIDARVAQIRAEIENTDSDYDR HHHCCEEHHCCHHHHHHHHHEEEECCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHH EKLQERLAKLAGGVAVIKVGAATEVEAKERKHRIEDAVRNAKAAIEEGLLPGGGVALVQA HHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH AAKAEKAEAVTSLTGEEATGAAIVFRAIEAPIKQIAENAGVSGDVVINTVRSLPDGEGFN HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCC AATDTYEDLLAAGVTDPVKVTRSALQNAASIAGLFLTTEAVVANKPEPKPAAPAAGADMG CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC Y C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA