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The map label for this gene is cspA [H]

Identifier: 213691589

GI number: 213691589

Start: 795689

End: 795928

Strand: Direct

Name: cspA [H]

Synonym: Blon_0693

Alternate gene names: 213691589

Gene position: 795689-795928 (Clockwise)

Preceding gene: 213691588

Following gene: 213691590

Centisome position: 28.09

GC content: 57.08

Gene sequence:

>240_bases
ATGGCACAAGGTACCGTGAAGTTCTTCCTTGCCAAGAAGGGGTTCGGGTTTATCCAGCCGGACGACGGCGGCGAGGACGT
TTTCGTGCACTACGCGGAAATCAAGGACGACGGCAGCACCAATAAGTTCAAGATGCTGTACGAAGGCGATCGCGTGGAGT
ATACGCCCGCTTCGTCCGGCAAAGGCACGCAGGCAAAGGATGTTGTCAAGCTGTCTTCGGGTGAAGCCCGCTCCGAGTGA

Upstream 100 bases:

>100_bases
GTCATCTAGTCGCGAGGTAGGGGGAGCGCGATGAGGTTCTTTTTACGTTCCCTATAGGTTTTGTGTCGCGACGCCTAAGG
GAACAAAGGAAAGACCAGAT

Downstream 100 bases:

>100_bases
GCAACACGCACGCAAGGATGTGCATTGAAGGCCCTGACCGTTTCGACGGTTGGGGCTTTTTCATGCCCAAAGCGCAATCG
CCGCCGATGATGTTGGCACT

Product: cold-shock DNA-binding domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 79; Mature: 78

Protein sequence:

>79_residues
MAQGTVKFFLAKKGFGFIQPDDGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPASSGKGTQAKDVVKLSSGEARSE

Sequences:

>Translated_79_residues
MAQGTVKFFLAKKGFGFIQPDDGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPASSGKGTQAKDVVKLSSGEARSE
>Mature_78_residues
AQGTVKFFLAKKGFGFIQPDDGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPASSGKGTQAKDVVKLSSGEARSE

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1786841, Length=69, Percent_Identity=49.2753623188406, Blast_Score=68, Evalue=9e-14,
Organism=Escherichia coli, GI1789979, Length=68, Percent_Identity=51.4705882352941, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI2367114, Length=68, Percent_Identity=47.0588235294118, Blast_Score=65, Evalue=1e-12,
Organism=Escherichia coli, GI1787839, Length=66, Percent_Identity=45.4545454545455, Blast_Score=63, Evalue=3e-12,
Organism=Escherichia coli, GI1787107, Length=71, Percent_Identity=42.2535211267606, Blast_Score=59, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 8614; Mature: 8482

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGTVKFFLAKKGFGFIQPDDGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPASSG
CCCCEEEEEEECCCCCEECCCCCCCEEEEEEEEECCCCCCCEEEEEEECCEEEECCCCCC
KGTQAKDVVKLSSGEARSE
CCCCCCEEEEECCCCCCCC
>Mature Secondary Structure 
AQGTVKFFLAKKGFGFIQPDDGGEDVFVHYAEIKDDGSTNKFKMLYEGDRVEYTPASSG
CCCEEEEEEECCCCCEECCCCCCCEEEEEEEEECCCCCCCEEEEEEECCEEEECCCCCC
KGTQAKDVVKLSSGEARSE
CCCCCCEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]