Click here to switch to the map view.

The map label for this gene is yliC [C]

Identifier: 213691547

GI number: 213691547

Start: 747232

End: 748188

Strand: Direct

Name: yliC [C]

Synonym: Blon_0648

Alternate gene names: 213691547

Gene position: 747232-748188 (Clockwise)

Preceding gene: 213691546

Following gene: 213691548

Centisome position: 26.38

GC content: 60.5

Gene sequence:

>957_bases
ATGAGTAATTTCCTCAGACTTCTCGGGCGCAGATTGATCGCCCTGCCGTTCATGGCATTCGGAGTCATCTTTCTCGTGTT
CTTCCTGATGTCGTTCTCGAAGTACGATCCCGCAGTCGCCGCGCTCGGCGAGAACGCGACCGGCGCGCAGCTGGAGGCGT
TTCGGCACGAGATGGGCTACGACAAGCCTTGGTGGTCGCAGTTCTGGTCCTATCTGGTCGGTCTGTGCCATGGCGACATG
GGCGTGTACGGCGTCAACAAGGACTCCGTTTCCGAGCGTATAGGACAAGCGTTCCCGATCACACTGCAGCTCACGTTCAT
CGGACTGCTCATTGCGGTCGTCATCGCAATCATCTTCGGCGTGCTCGCCGCGCTCTACCGTGATACGTGGGTGGACCAGA
CGATCCGCGTCCTTTCGATCATCGCGATCGCGACGCCGTCGTTCTGGCTCGGCGTGCTGCTCATCTACGTGCTGCAGATC
AAGCTCTCCTGGCTGCCCGGCGCGGGTCCGCTCGTCCCGTTCTCGCAGGATCCGGGTGCCTATCTCGAACGCATGGCCAT
GCCGACCTTTGCGCTTGGTCTGCCGGTCGCCGGCCAACTTACACGCATCATCCGCACGTCGATGGTCGAGGAGCTCGACA
AGGACTACGTGCGCACCGCGATCGGCGCGGGCGTGCCGAAGGGCGTCGTCGTGGCGCGCAACGTCTTCCGCAACGCGCTC
ATCACGCCGATCACAACGTTGGGCATGAAAATCGGCTACCTGCTCGGAGGCGCTATCGTCATCGAAGTCATCTTCGCGCT
CCCCGGCATGGGCACGGCGATGTTCGATGGCATCAACGGCAACGAGCCGACGCTCGTGCAAGGTGTAGTGCTCATCGTGG
CGCTCTCGTTCATCATCATCAATATCGTGGTTGATCTGCTTTACGTGCTGATTAACCCGAGGATTAGGACGGTGTGA

Upstream 100 bases:

>100_bases
AGACAGGCCCGTTCATCTCGTTCCCCTTCCCTCCGCGATCCGTGGACGGGCCCGTCTTCCCCATTCCCTTATTCCCGATT
CTTTCACCATTGGACATATC

Downstream 100 bases:

>100_bases
GATGCTGTTCGGACAAAACGAAGTTGTCAAGGCGGCGGCGACCAAACCCAAGGTCAGGTTCAACCGCTTCAACAAGATGA
CGTTGGGATCGAAGATCTCG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 317

Protein sequence:

>318_residues
MSNFLRLLGRRLIALPFMAFGVIFLVFFLMSFSKYDPAVAALGENATGAQLEAFRHEMGYDKPWWSQFWSYLVGLCHGDM
GVYGVNKDSVSERIGQAFPITLQLTFIGLLIAVVIAIIFGVLAALYRDTWVDQTIRVLSIIAIATPSFWLGVLLIYVLQI
KLSWLPGAGPLVPFSQDPGAYLERMAMPTFALGLPVAGQLTRIIRTSMVEELDKDYVRTAIGAGVPKGVVVARNVFRNAL
ITPITTLGMKIGYLLGGAIVIEVIFALPGMGTAMFDGINGNEPTLVQGVVLIVALSFIIINIVVDLLYVLINPRIRTV

Sequences:

>Translated_318_residues
MSNFLRLLGRRLIALPFMAFGVIFLVFFLMSFSKYDPAVAALGENATGAQLEAFRHEMGYDKPWWSQFWSYLVGLCHGDM
GVYGVNKDSVSERIGQAFPITLQLTFIGLLIAVVIAIIFGVLAALYRDTWVDQTIRVLSIIAIATPSFWLGVLLIYVLQI
KLSWLPGAGPLVPFSQDPGAYLERMAMPTFALGLPVAGQLTRIIRTSMVEELDKDYVRTAIGAGVPKGVVVARNVFRNAL
ITPITTLGMKIGYLLGGAIVIEVIFALPGMGTAMFDGINGNEPTLVQGVVLIVALSFIIINIVVDLLYVLINPRIRTV
>Mature_317_residues
SNFLRLLGRRLIALPFMAFGVIFLVFFLMSFSKYDPAVAALGENATGAQLEAFRHEMGYDKPWWSQFWSYLVGLCHGDMG
VYGVNKDSVSERIGQAFPITLQLTFIGLLIAVVIAIIFGVLAALYRDTWVDQTIRVLSIIAIATPSFWLGVLLIYVLQIK
LSWLPGAGPLVPFSQDPGAYLERMAMPTFALGLPVAGQLTRIIRTSMVEELDKDYVRTAIGAGVPKGVVVARNVFRNALI
TPITTLGMKIGYLLGGAIVIEVIFALPGMGTAMFDGINGNEPTLVQGVVLIVALSFIIINIVVDLLYVLINPRIRTV

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=307, Percent_Identity=35.8306188925081, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1789965, Length=319, Percent_Identity=32.6018808777429, Blast_Score=167, Evalue=6e-43,
Organism=Escherichia coli, GI1787761, Length=333, Percent_Identity=35.1351351351351, Blast_Score=160, Evalue=9e-41,
Organism=Escherichia coli, GI1787497, Length=315, Percent_Identity=32.6984126984127, Blast_Score=151, Evalue=6e-38,
Organism=Escherichia coli, GI1789888, Length=315, Percent_Identity=28.2539682539683, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787550, Length=271, Percent_Identity=26.5682656826568, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1788504, Length=269, Percent_Identity=28.2527881040892, Blast_Score=98, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34770; Mature: 34639

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNFLRLLGRRLIALPFMAFGVIFLVFFLMSFSKYDPAVAALGENATGAQLEAFRHEMGY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHCCC
DKPWWSQFWSYLVGLCHGDMGVYGVNKDSVSERIGQAFPITLQLTFIGLLIAVVIAIIFG
CCCHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
VLAALYRDTWVDQTIRVLSIIAIATPSFWLGVLLIYVLQIKLSWLPGAGPLVPFSQDPGA
HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
YLERMAMPTFALGLPVAGQLTRIIRTSMVEELDKDYVRTAIGAGVPKGVVVARNVFRNAL
HHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
ITPITTLGMKIGYLLGGAIVIEVIFALPGMGTAMFDGINGNEPTLVQGVVLIVALSFIII
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
NIVVDLLYVLINPRIRTV
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SNFLRLLGRRLIALPFMAFGVIFLVFFLMSFSKYDPAVAALGENATGAQLEAFRHEMGY
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHCCC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HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]