| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is spaC [H]
Identifier: 213691426
GI number: 213691426
Start: 588594
End: 589799
Strand: Direct
Name: spaC [H]
Synonym: Blon_0521
Alternate gene names: 213691426
Gene position: 588594-589799 (Clockwise)
Preceding gene: 213691425
Following gene: 213691427
Centisome position: 20.78
GC content: 45.44
Gene sequence:
>1206_bases ATGAAGACACGTAATGACATTCAACAGGAGGTGACCCTCATTGCAAGTAATCTCGAAGATATCATCCCCATTCGGTATCA AGAGGCTAATCGTACGAAAAGCTTTAACATTAACGGAGGGACTCCTGCCGCAATTCTATATTTAAGTGTCCTTGACGCAT TATTTCCCGATGCTGGATATGATGTTCAGGCTCACAACTACGCGACAAGCATGATTTTGGAATATAAACATACCCCAAAC ATTGGAATTGGACTGTTCGGGGGGACCACACTATTGGCTTGGTGTCTGCAGTCGATTTCCCGTGGAGGAAGCAGATATCA AGGCGCGATTAGAGAACTTGAATCGAGGATCGTCTTTCAGGCAAGACAACAATTGACATTTTTATCAAACGTGAATGCGC CAATATCATCCGAATATTACGACGTTATATCCGGACTCTCTGGCGTGGTTTTGTATGGCATGCGATTCCGGTCCGATGGG CTGCGATTGATTTCTCGGCAGATTTGCAGTAGATTTTGCGAACTATTAGCAACTTCGAATTTCCACGCCTTCGGGTCTTT ATCAGCCACTTCGGGACAGGATTCCGTGGCTCAGAAGACGACCACCGACTATGGTTACGCGCATGGTATTTTGGGAGTAT TGATGAGTTGCATTCTTTCGGATGTGAACCATGATAATAATATGGAACCATTCGCTGCGATAAGGCAGCTTGTTGATATT TCGAATCACTCGAGAAACTACATACTTCCATACTCTTCCTCAGATTACACTGAAACCGTTAGTAATGGACGGTATGCCTG GTGTTACGGCAACATGCCCTTCTATTTTTTGTCACTAATGCTGAAACCGGTTGATCCAATAATTGCGGAATCTCTATTGA ATGCCGCTATTGCTCCCCTGAAGGTTAATACCAGTCAAGTACATGATCTTGGCGTAATCGGTCTTGTTGATAACTCTATA TGCCATGGCCGAGCGGGAATAGTCCTAGGGCTTCACCCCTACTTGAGCCACAAGGATAGTCGGCCTATTCGCGATCAGCT CCTTGAAGAGATCGATTGTTCTGTTGCGAATCCTATTGACAGTGGATTTCTCGAAGGCGACTTGGGCACCTTGGCTGTCC GAGTGGCACTAGAATACACCGACTCTATTGCGCATCTACCGGCTTTCTTTCCTTTTGTTTCTCCTACACTTTGGGAGGGA ATATGA
Upstream 100 bases:
>100_bases ACATGTCTGCAAATCGCCTTGGGCTTGATCGTAAAGACGAGGCCATATTCTGGCGGGCTCTTCTCAATCATCTAAGATCC GCAGATTTTGGAGGTGAGGA
Downstream 100 bases:
>100_bases TTGCTAGAGCATTAAATGTGACACTGATCTATGGAAAATCGAGAAATCCAGTCTTGCATAGTTTGAACCTTGAAATCGAT TCAGGGCAAGTTCTTCCAAT
Product: Lanthionine synthetase C family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 401; Mature: 401
Protein sequence:
>401_residues MKTRNDIQQEVTLIASNLEDIIPIRYQEANRTKSFNINGGTPAAILYLSVLDALFPDAGYDVQAHNYATSMILEYKHTPN IGIGLFGGTTLLAWCLQSISRGGSRYQGAIRELESRIVFQARQQLTFLSNVNAPISSEYYDVISGLSGVVLYGMRFRSDG LRLISRQICSRFCELLATSNFHAFGSLSATSGQDSVAQKTTTDYGYAHGILGVLMSCILSDVNHDNNMEPFAAIRQLVDI SNHSRNYILPYSSSDYTETVSNGRYAWCYGNMPFYFLSLMLKPVDPIIAESLLNAAIAPLKVNTSQVHDLGVIGLVDNSI CHGRAGIVLGLHPYLSHKDSRPIRDQLLEEIDCSVANPIDSGFLEGDLGTLAVRVALEYTDSIAHLPAFFPFVSPTLWEG I
Sequences:
>Translated_401_residues MKTRNDIQQEVTLIASNLEDIIPIRYQEANRTKSFNINGGTPAAILYLSVLDALFPDAGYDVQAHNYATSMILEYKHTPN IGIGLFGGTTLLAWCLQSISRGGSRYQGAIRELESRIVFQARQQLTFLSNVNAPISSEYYDVISGLSGVVLYGMRFRSDG LRLISRQICSRFCELLATSNFHAFGSLSATSGQDSVAQKTTTDYGYAHGILGVLMSCILSDVNHDNNMEPFAAIRQLVDI SNHSRNYILPYSSSDYTETVSNGRYAWCYGNMPFYFLSLMLKPVDPIIAESLLNAAIAPLKVNTSQVHDLGVIGLVDNSI CHGRAGIVLGLHPYLSHKDSRPIRDQLLEEIDCSVANPIDSGFLEGDLGTLAVRVALEYTDSIAHLPAFFPFVSPTLWEG I >Mature_401_residues MKTRNDIQQEVTLIASNLEDIIPIRYQEANRTKSFNINGGTPAAILYLSVLDALFPDAGYDVQAHNYATSMILEYKHTPN IGIGLFGGTTLLAWCLQSISRGGSRYQGAIRELESRIVFQARQQLTFLSNVNAPISSEYYDVISGLSGVVLYGMRFRSDG LRLISRQICSRFCELLATSNFHAFGSLSATSGQDSVAQKTTTDYGYAHGILGVLMSCILSDVNHDNNMEPFAAIRQLVDI SNHSRNYILPYSSSDYTETVSNGRYAWCYGNMPFYFLSLMLKPVDPIIAESLLNAAIAPLKVNTSQVHDLGVIGLVDNSI CHGRAGIVLGLHPYLSHKDSRPIRDQLLEEIDCSVANPIDSGFLEGDLGTLAVRVALEYTDSIAHLPAFFPFVSPTLWEG I
Specific function: Could be implicated in the processing or the export process of the subtilin lantibiotic [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To S.epidermidis epiC and L.lactis nisC [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007822 - InterPro: IPR020452 [H]
Pfam domain/function: PF05147 LANC_like [H]
EC number: NA
Molecular weight: Translated: 44138; Mature: 44138
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTRNDIQQEVTLIASNLEDIIPIRYQEANRTKSFNINGGTPAAILYLSVLDALFPDAGY CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC DVQAHNYATSMILEYKHTPNIGIGLFGGTTLLAWCLQSISRGGSRYQGAIRELESRIVFQ CEEHHHHHHHHEEEECCCCCCCEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH ARQQLTFLSNVNAPISSEYYDVISGLSGVVLYGMRFRSDGLRLISRQICSRFCELLATSN HHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC FHAFGSLSATSGQDSVAQKTTTDYGYAHGILGVLMSCILSDVNHDNNMEPFAAIRQLVDI CCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH SNHSRNYILPYSSSDYTETVSNGRYAWCYGNMPFYFLSLMLKPVDPIIAESLLNAAIAPL CCCCCCEEEECCCCCHHHHHCCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHCCE KVNTSQVHDLGVIGLVDNSICHGRAGIVLGLHPYLSHKDSRPIRDQLLEEIDCSVANPID ECCHHHHHHCEEEEEECCCCCCCCCCEEEEECHHHCCCCCCCHHHHHHHHHCCCCCCCCC SGFLEGDLGTLAVRVALEYTDSIAHLPAFFPFVSPTLWEGI CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC >Mature Secondary Structure MKTRNDIQQEVTLIASNLEDIIPIRYQEANRTKSFNINGGTPAAILYLSVLDALFPDAGY CCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCC DVQAHNYATSMILEYKHTPNIGIGLFGGTTLLAWCLQSISRGGSRYQGAIRELESRIVFQ CEEHHHHHHHHEEEECCCCCCCEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH ARQQLTFLSNVNAPISSEYYDVISGLSGVVLYGMRFRSDGLRLISRQICSRFCELLATSN HHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC FHAFGSLSATSGQDSVAQKTTTDYGYAHGILGVLMSCILSDVNHDNNMEPFAAIRQLVDI CCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH SNHSRNYILPYSSSDYTETVSNGRYAWCYGNMPFYFLSLMLKPVDPIIAESLLNAAIAPL CCCCCCEEEECCCCCHHHHHCCCCEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHHCCE KVNTSQVHDLGVIGLVDNSICHGRAGIVLGLHPYLSHKDSRPIRDQLLEEIDCSVANPID ECCHHHHHHCEEEEEECCCCCCCCCCEEEEECHHHCCCCCCCHHHHHHHHHCCCCCCCCC SGFLEGDLGTLAVRVALEYTDSIAHLPAFFPFVSPTLWEGI CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1539969; 1735728 [H]