BacMap

Definition	Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession	NC_011593
Length	2,832,748

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The map label for this gene is ccmA [H]

Identifier: 213691427

GI number: 213691427

Start: 589796

End: 590668

Strand: Direct

Name: ccmA [H]

Synonym: Blon_0522

Alternate gene names: 213691427

Gene position: 589796-590668 (Clockwise)

Preceding gene: 213691426

Following gene: 213691428

Centisome position: 20.82

GC content: 46.39

Gene sequence:

>873_bases
ATGATTGCTAGAGCATTAAATGTGACACTGATCTATGGAAAATCGAGAAATCCAGTCTTGCATAGTTTGAACCTTGAAAT
CGATTCAGGGCAAGTTCTTCCAATCCTTGGCGGTAATGGAACAGGAAAAACGACACTGTTGAAAGCACTATCGGGGCTAC
TTCGCCCACACTTGGGTCGAATCCTAATTGATGATTCGGATCTTTATCAGAAGAGAGGGAGTGCACTGCAAAGGCTCTCG
AGCTCGCTCTACTCCGAAAGATCATTTTATTATCGCTTGTCAGCCCGCGAAAATCTCCGCTATTTCTTGTCGCTTCGTGG
CATTTATGGCAGGACTGCAATGTCGTCAATTGACATGGCTCTGGACAGATTCGATTTGCTTGGATTGCAGGATATTCCAT
TCATGCACTTATCCCTAGGGCAACGAAAGCGACTAGGACTTGCGCGAGCGTTCGCTGCGCCAGCCAGTCTCTATATCTTA
GATGAACCTACGGCAAACCTAGATGCCAAGTCATGCAGGCTTGTCTATCAAGCCATGACGGACAAGAGCGCCGACGGAGC
TAGTATACTATTCTCTACCCACAACGTGGCCGACCTTGCTACCTCCACAGGAAATGTAATATATCTTAAAAATGGGAATG
CGACACGTGTTCATCTCGAGACTCGAGACTCCATTACTGCCCGCAAGCGTTTTAGAATAGTCGGATCTCTTGACCCTGAA
TCCATTGCATCAATTCCCGAAGTGTCTTGTGTGATTTCTCAGTCCGAGGTCGAGGTTGATATACCTGTTGGTAAGTCTCT
TGGATCAGTGCTTCAATCCTTTGAACGAATTGGGATCGAGGTCAACGAAGTAATTGATGACCGGAGTAGATAA

Upstream 100 bases:

>100_bases
TGGGCACCTTGGCTGTCCGAGTGGCACTAGAATACACCGACTCTATTGCGCATCTACCGGCTTTCTTTCCTTTTGTTTCT
CCTACACTTTGGGAGGGAAT

Downstream 100 bases:

>100_bases
AATGCATTCTTTTTTAATCGGCCTCTACCTGTATTTGCGGAGAGAATTCCTTGAACTCGTAACTTATAAGCTCTCCTTGA
TGCTAGGTGTTGTTTCAGCG

Product: heme exporter protein CcmA

Products: NA

Alternate protein names: Heme exporter protein A [H]

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MIARALNVTLIYGKSRNPVLHSLNLEIDSGQVLPILGGNGTGKTTLLKALSGLLRPHLGRILIDDSDLYQKRGSALQRLS
SSLYSERSFYYRLSARENLRYFLSLRGIYGRTAMSSIDMALDRFDLLGLQDIPFMHLSLGQRKRLGLARAFAAPASLYIL
DEPTANLDAKSCRLVYQAMTDKSADGASILFSTHNVADLATSTGNVIYLKNGNATRVHLETRDSITARKRFRIVGSLDPE
SIASIPEVSCVISQSEVEVDIPVGKSLGSVLQSFERIGIEVNEVIDDRSR

Sequences:

>Translated_290_residues
MIARALNVTLIYGKSRNPVLHSLNLEIDSGQVLPILGGNGTGKTTLLKALSGLLRPHLGRILIDDSDLYQKRGSALQRLS
SSLYSERSFYYRLSARENLRYFLSLRGIYGRTAMSSIDMALDRFDLLGLQDIPFMHLSLGQRKRLGLARAFAAPASLYIL
DEPTANLDAKSCRLVYQAMTDKSADGASILFSTHNVADLATSTGNVIYLKNGNATRVHLETRDSITARKRFRIVGSLDPE
SIASIPEVSCVISQSEVEVDIPVGKSLGSVLQSFERIGIEVNEVIDDRSR
>Mature_290_residues
MIARALNVTLIYGKSRNPVLHSLNLEIDSGQVLPILGGNGTGKTTLLKALSGLLRPHLGRILIDDSDLYQKRGSALQRLS
SSLYSERSFYYRLSARENLRYFLSLRGIYGRTAMSSIDMALDRFDLLGLQDIPFMHLSLGQRKRLGLARAFAAPASLYIL
DEPTANLDAKSCRLVYQAMTDKSADGASILFSTHNVADLATSTGNVIYLKNGNATRVHLETRDSITARKRFRIVGSLDPE
SIASIPEVSCVISQSEVEVDIPVGKSLGSVLQSFERIGIEVNEVIDDRSR

Specific function: Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system [H]

COG id: COG4555

COG function: function code CP; ABC-type Na+ transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI153792144, Length=194, Percent_Identity=31.9587628865979, Blast_Score=88, Evalue=7e-18,
Organism=Homo sapiens, GI27477115, Length=238, Percent_Identity=28.1512605042017, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI27436953, Length=212, Percent_Identity=29.7169811320755, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI105990541, Length=227, Percent_Identity=28.1938325991189, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI150417984, Length=182, Percent_Identity=30.2197802197802, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI45446740, Length=256, Percent_Identity=24.609375, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI47078218, Length=256, Percent_Identity=24.609375, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI27881501, Length=218, Percent_Identity=23.8532110091743, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI30795238, Length=218, Percent_Identity=23.8532110091743, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI27262624, Length=181, Percent_Identity=28.7292817679558, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI27262626, Length=181, Percent_Identity=28.7292817679558, Blast_Score=75, Evalue=6e-14,
Organism=Homo sapiens, GI21536376, Length=232, Percent_Identity=27.5862068965517, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI116734710, Length=193, Percent_Identity=30.5699481865285, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI9961252, Length=206, Percent_Identity=26.6990291262136, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI31657092, Length=199, Percent_Identity=28.1407035175879, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI4505771, Length=206, Percent_Identity=26.6990291262136, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI89111135, Length=209, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI21729876, Length=213, Percent_Identity=25.3521126760563, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI21729873, Length=213, Percent_Identity=25.3521126760563, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI15149474, Length=213, Percent_Identity=25.3521126760563, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI6005701, Length=204, Percent_Identity=25, Blast_Score=67, Evalue=3e-11,
Organism=Escherichia coli, GI87081709, Length=213, Percent_Identity=30.9859154929577, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI87081782, Length=172, Percent_Identity=30.2325581395349, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87082064, Length=193, Percent_Identity=33.6787564766839, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI87082267, Length=210, Percent_Identity=27.6190476190476, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI48994943, Length=178, Percent_Identity=33.1460674157303, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786563, Length=232, Percent_Identity=28.8793103448276, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1790525, Length=219, Percent_Identity=29.6803652968037, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1787029, Length=211, Percent_Identity=26.0663507109005, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI48995001, Length=205, Percent_Identity=27.3170731707317, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1790467, Length=259, Percent_Identity=24.7104247104247, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788210, Length=198, Percent_Identity=26.7676767676768, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790739, Length=252, Percent_Identity=25.3968253968254, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081791, Length=219, Percent_Identity=25.1141552511416, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788897, Length=218, Percent_Identity=27.5229357798165, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788761, Length=212, Percent_Identity=26.8867924528302, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI87082268, Length=236, Percent_Identity=25.8474576271186, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787370, Length=195, Percent_Identity=25.6410256410256, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789873, Length=198, Percent_Identity=25.2525252525253, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790544, Length=221, Percent_Identity=26.6968325791855, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787089, Length=213, Percent_Identity=25.3521126760563, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87081834, Length=221, Percent_Identity=28.5067873303167, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1788225, Length=203, Percent_Identity=26.1083743842365, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787712, Length=215, Percent_Identity=25.5813953488372, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786319, Length=267, Percent_Identity=24.3445692883895, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789032, Length=206, Percent_Identity=25.2427184466019, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787112, Length=219, Percent_Identity=28.7671232876712, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1789672, Length=213, Percent_Identity=23.0046948356808, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788165, Length=206, Percent_Identity=29.6116504854369, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788540, Length=224, Percent_Identity=26.7857142857143, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789991, Length=231, Percent_Identity=23.8095238095238, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786398, Length=227, Percent_Identity=27.7533039647577, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787143, Length=197, Percent_Identity=26.9035532994924, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789593, Length=195, Percent_Identity=30.2564102564103, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787164, Length=205, Percent_Identity=28.780487804878, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786345, Length=158, Percent_Identity=32.2784810126582, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1789864, Length=209, Percent_Identity=24.4019138755981, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1786803, Length=174, Percent_Identity=29.3103448275862, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1786253, Length=184, Percent_Identity=29.3478260869565, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787105, Length=212, Percent_Identity=25.9433962264151, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1786872, Length=184, Percent_Identity=27.1739130434783, Blast_Score=61, Evalue=7e-11,
Organism=Escherichia coli, GI1787792, Length=196, Percent_Identity=24.4897959183673, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=233, Percent_Identity=26.6094420600858, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI17558664, Length=223, Percent_Identity=27.8026905829596, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17569143, Length=225, Percent_Identity=26.2222222222222, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115533592, Length=201, Percent_Identity=26.865671641791, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71983523, Length=203, Percent_Identity=25.615763546798, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=203, Percent_Identity=25.615763546798, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=203, Percent_Identity=25.615763546798, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193208177, Length=176, Percent_Identity=28.4090909090909, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=191, Percent_Identity=27.7486910994764, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25146777, Length=202, Percent_Identity=28.7128712871287, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6322640, Length=219, Percent_Identity=26.9406392694064, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24666092, Length=251, Percent_Identity=26.6932270916335, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI221500365, Length=228, Percent_Identity=27.6315789473684, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007184, Length=228, Percent_Identity=27.6315789473684, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI28571209, Length=187, Percent_Identity=28.8770053475936, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI85725262, Length=201, Percent_Identity=31.3432835820896, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24648314, Length=181, Percent_Identity=26.5193370165746, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI161077321, Length=249, Percent_Identity=28.5140562248996, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI221512771, Length=188, Percent_Identity=26.5957446808511, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24659289, Length=199, Percent_Identity=27.6381909547739, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI28574150, Length=191, Percent_Identity=26.1780104712042, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24643674, Length=177, Percent_Identity=23.1638418079096, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI116007328, Length=191, Percent_Identity=26.1780104712042, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24650853, Length=197, Percent_Identity=26.3959390862944, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI28573571, Length=214, Percent_Identity=23.8317757009346, Blast_Score=68, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24650855, Length=197, Percent_Identity=26.3959390862944, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI281362751, Length=197, Percent_Identity=26.3959390862944, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28574533, Length=219, Percent_Identity=28.7671232876712, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28573573, Length=192, Percent_Identity=24.4791666666667, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI221474134, Length=171, Percent_Identity=31.5789473684211, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR005895
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: =3.6.3.41 [H]

Molecular weight: Translated: 31889; Mature: 31889

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIARALNVTLIYGKSRNPVLHSLNLEIDSGQVLPILGGNGTGKTTLLKALSGLLRPHLGR
CCCEEEEEEEEEECCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCE
ILIDDSDLYQKRGSALQRLSSSLYSERSFYYRLSARENLRYFLSLRGIYGRTAMSSIDMA
EEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECCHHCHHHHHHHHHH
LDRFDLLGLQDIPFMHLSLGQRKRLGLARAFAAPASLYILDEPTANLDAKSCRLVYQAMT
HHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHC
DKSADGASILFSTHNVADLATSTGNVIYLKNGNATRVHLETRDSITARKRFRIVGSLDPE
CCCCCCCEEEEECCCHHHHHCCCCCEEEEECCCEEEEEEECCCCHHHHHEEEEEECCCHH
SIASIPEVSCVISQSEVEVDIPVGKSLGSVLQSFERIGIEVNEVIDDRSR
HHHCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCC
>Mature Secondary Structure
MIARALNVTLIYGKSRNPVLHSLNLEIDSGQVLPILGGNGTGKTTLLKALSGLLRPHLGR
CCCEEEEEEEEEECCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCE
ILIDDSDLYQKRGSALQRLSSSLYSERSFYYRLSARENLRYFLSLRGIYGRTAMSSIDMA
EEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEECCHHCHHHHHHHHHH
LDRFDLLGLQDIPFMHLSLGQRKRLGLARAFAAPASLYILDEPTANLDAKSCRLVYQAMT
HHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHC
DKSADGASILFSTHNVADLATSTGNVIYLKNGNATRVHLETRDSITARKRFRIVGSLDPE
CCCCCCCEEEEECCCHHHHHCCCCCEEEEECCCEEEEEEECCCCHHHHHEEEEEECCCHH
SIASIPEVSCVISQSEVEVDIPVGKSLGSVLQSFERIGIEVNEVIDDRSR
HHHCCCCEEEEEECCCEEEECCCCHHHHHHHHHHHHHCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12024217 [H]