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The map label for this gene is degU [H]

Identifier: 213691407

GI number: 213691407

Start: 572663

End: 573325

Strand: Reverse

Name: degU [H]

Synonym: Blon_0501

Alternate gene names: 213691407

Gene position: 573325-572663 (Counterclockwise)

Preceding gene: 213691409

Following gene: 213691406

Centisome position: 20.24

GC content: 49.77

Gene sequence:

>663_bases
ATGTACTTAGGAAAAAGAATCAGAATCGCAATTGTAGACAATGACAAACTTGCCATCGGTATGATGAGACTACTGATTGG
GCATCTCCTCCCGTCAGCGGACATATGCTGGACCGCATTCACAGGTGAGGAGGCCGTCAGCAAAAGTCTCTTCGACAAGA
CACAGCCCGACGTACTAATAGTGGATATGTCACTAGAAGGCATGAGTGGATTCGAAGTGTGTCGAAGGATCCGTTCCCGG
ACCCCCAAAATCGCACTCATAGGGGTGACTGCCTTCTCTCCTGAGCGTTACTATGCTGATGCACTGTCCAATGGGGCCAA
TTGCCTGATTCCCAAAGTCCAGATGAGAGATATATGCCGGGCATCATATCGGCTTGCGAACGGGCAACAGCCCGGCACTC
AATATGAATCTTCCGAGACTGCTCAGGAAGCGTACTCCAAGCTTTCGCCCGAAGACGCTGGTCAGTATCACAAAAACCTC
ACCAGAAGGGAAACGGAGGTCATGAGTCTGTGCGCACGTGGATACACCTCCCAGGAGATAGGCGATTACTTGGGCATAGG
CGAATCAACTGTCAAGACCTACATCAAACGCGTGACCGAAAAAATGGACGTTAAAAATCGAACTCAAGCGGTGATATGTT
GGCTCAAAGAGAGGGAATCATGA

Upstream 100 bases:

>100_bases
GCGATACTGCAAATATTGTCTCTGCACAAGTAATTTGCATGCCACTGTATGGCACCAAATTATTCAAATAAATTCGTTAT
CGGGTCCACACGGCAAGGCA

Downstream 100 bases:

>100_bases
GGATTCGGAAATCTCCTCTTGTTTCCTTTGTGCTCAACCATCCCACGTACATCGGATACCTACTTTCCATAGTTAGCGTC
GCACTCACTATGGCGGAAAC

Product: two component transcriptional regulator, LuxR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MYLGKRIRIAIVDNDKLAIGMMRLLIGHLLPSADICWTAFTGEEAVSKSLFDKTQPDVLIVDMSLEGMSGFEVCRRIRSR
TPKIALIGVTAFSPERYYADALSNGANCLIPKVQMRDICRASYRLANGQQPGTQYESSETAQEAYSKLSPEDAGQYHKNL
TRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVTEKMDVKNRTQAVICWLKERES

Sequences:

>Translated_220_residues
MYLGKRIRIAIVDNDKLAIGMMRLLIGHLLPSADICWTAFTGEEAVSKSLFDKTQPDVLIVDMSLEGMSGFEVCRRIRSR
TPKIALIGVTAFSPERYYADALSNGANCLIPKVQMRDICRASYRLANGQQPGTQYESSETAQEAYSKLSPEDAGQYHKNL
TRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVTEKMDVKNRTQAVICWLKERES
>Mature_220_residues
MYLGKRIRIAIVDNDKLAIGMMRLLIGHLLPSADICWTAFTGEEAVSKSLFDKTQPDVLIVDMSLEGMSGFEVCRRIRSR
TPKIALIGVTAFSPERYYADALSNGANCLIPKVQMRDICRASYRLANGQQPGTQYESSETAQEAYSKLSPEDAGQYHKNL
TRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVTEKMDVKNRTQAVICWLKERES

Specific function: Regulating factor for the production of extracellular proteases. The N-terminal region acts as an inhibitor, whereas the C-terminal region carries enhancing activity [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788222, Length=201, Percent_Identity=26.3681592039801, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788521, Length=227, Percent_Identity=25.5506607929515, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 24722; Mature: 24722

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLGKRIRIAIVDNDKLAIGMMRLLIGHLLPSADICWTAFTGEEAVSKSLFDKTQPDVLI
CCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCEEE
VDMSLEGMSGFEVCRRIRSRTPKIALIGVTAFSPERYYADALSNGANCLIPKVQMRDICR
EEECCCCCCHHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHCCCCCEEECCHHHHHHHH
ASYRLANGQQPGTQYESSETAQEAYSKLSPEDAGQYHKNLTRRETEVMSLCARGYTSQEI
HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
GDYLGIGESTVKTYIKRVTEKMDVKNRTQAVICWLKERES
HHHHCCCHHHHHHHHHHHHHHHCCCCCHHEEEEEEECCCC
>Mature Secondary Structure
MYLGKRIRIAIVDNDKLAIGMMRLLIGHLLPSADICWTAFTGEEAVSKSLFDKTQPDVLI
CCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCEEE
VDMSLEGMSGFEVCRRIRSRTPKIALIGVTAFSPERYYADALSNGANCLIPKVQMRDICR
EEECCCCCCHHHHHHHHHCCCCCEEEEEEEEECCHHHHHHHHCCCCCEEECCHHHHHHHH
ASYRLANGQQPGTQYESSETAQEAYSKLSPEDAGQYHKNLTRRETEVMSLCARGYTSQEI
HHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
GDYLGIGESTVKTYIKRVTEKMDVKNRTQAVICWLKERES
HHHHCCCHHHHHHHHHHHHHHHCCCCCHHEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7765823 [H]