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The map label for this gene is rimM [H]

Identifier: 213691294

GI number: 213691294

Start: 442601

End: 443215

Strand: Reverse

Name: rimM [H]

Synonym: Blon_0381

Alternate gene names: 213691294

Gene position: 443215-442601 (Counterclockwise)

Preceding gene: 213691295

Following gene: 213691293

Centisome position: 15.65

GC content: 60.33

Gene sequence:

>615_bases
ATGGCACAGCAAGACATGCACGACGACCCTCAGCAGCTCGAGTTGCTGAGGGTCGCTCGTATTGGCCGCGCACAGGGCCT
GAAGGGCGAAGTCACCGTGCGCCTGTACACCGATGATCCCGAGTGGCGCTTCGAGCCGGACTCCGTGCTCTACAGCCAGG
ATGGCGAGGCCGAGTACATCGTCGAGGGCTCACGCACGTTCAAGGATCGTTGGATTCTCAAGCTTGAGGGCGTCGACGAC
CGCAATGCCGCCGAGGCCCTAAACGGTGTCGAACTCTACGGCGAGGTCGACGACGCAGAAGATATGCTCGAAGCCGACGA
ATGGTATCCCAAGGATCTTATTGGCCTTGAGGCCCGTCTAGTCGAGGGCAACGGTCTGGGACTGCCCGCCGGCCAAGTGG
TCGGCAAAGTGGTGAATGTGGTCGACTCCCCCGCTCAGTCACTGCTCAAGATTCGTTTGACCGAGCCGGTGGTAACCGGC
CAGAATTCCAAGGGCGAGGATGTAGTCGAGAAGACCGCGTTGGTGCCGTTCGTGGAGGAACTGGTGCCCGACATCGATCT
GGAGGAGCAATACCTCACGCTCGACCCACCCGGTGGTTTGATTCCGGGATTGTAA

Upstream 100 bases:

>100_bases
GCCAACGCGATTCGCACCGTGATTCAGGCACTGTCTGACCACAAGGTCCGCGTTGACATCATGGACGTCCGTCGATAACC
GATAAGGAACGATTCACAGC

Downstream 100 bases:

>100_bases
ACCTCATATACACGTGAGACCAAAGGACTTTCTGGCTATTTGCTGGCAGAAAGTCCTTTTGCGTATGAGCAGAAACATCG
AGACGCTAAACCTTCCTCAT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MAQQDMHDDPQQLELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGEAEYIVEGSRTFKDRWILKLEGVDD
RNAAEALNGVELYGEVDDAEDMLEADEWYPKDLIGLEARLVEGNGLGLPAGQVVGKVVNVVDSPAQSLLKIRLTEPVVTG
QNSKGEDVVEKTALVPFVEELVPDIDLEEQYLTLDPPGGLIPGL

Sequences:

>Translated_204_residues
MAQQDMHDDPQQLELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGEAEYIVEGSRTFKDRWILKLEGVDD
RNAAEALNGVELYGEVDDAEDMLEADEWYPKDLIGLEARLVEGNGLGLPAGQVVGKVVNVVDSPAQSLLKIRLTEPVVTG
QNSKGEDVVEKTALVPFVEELVPDIDLEEQYLTLDPPGGLIPGL
>Mature_203_residues
AQQDMHDDPQQLELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGEAEYIVEGSRTFKDRWILKLEGVDDR
NAAEALNGVELYGEVDDAEDMLEADEWYPKDLIGLEARLVEGNGLGLPAGQVVGKVVNVVDSPAQSLLKIRLTEPVVTGQ
NSKGEDVVEKTALVPFVEELVPDIDLEEQYLTLDPPGGLIPGL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 22558; Mature: 22426

Theoretical pI: Translated: 3.92; Mature: 3.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQQDMHDDPQQLELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGEAEYI
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEECCCCEEECCCCCEEEE
VEGSRTFKDRWILKLEGVDDRNAAEALNGVELYGEVDDAEDMLEADEWYPKDLIGLEARL
EECCCCCCCEEEEEEECCCCCCHHHHHCCEEEEECCCCHHHHHHHHCCCCCHHHCCEEEE
VEGNGLGLPAGQVVGKVVNVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEE
ECCCCCCCCHHHHHHHHHHHHCCCHHHHHEEHCCCCEEECCCCCCHHHHHHHHHHHHHHH
LVPDIDLEEQYLTLDPPGGLIPGL
HCCCCCCCCCEEEECCCCCCCCCC
>Mature Secondary Structure 
AQQDMHDDPQQLELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGEAEYI
CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEECCCCEEECCCCCEEEE
VEGSRTFKDRWILKLEGVDDRNAAEALNGVELYGEVDDAEDMLEADEWYPKDLIGLEARL
EECCCCCCCEEEEEEECCCCCCHHHHHCCEEEEECCCCHHHHHHHHCCCCCHHHCCEEEE
VEGNGLGLPAGQVVGKVVNVVDSPAQSLLKIRLTEPVVTGQNSKGEDVVEKTALVPFVEE
ECCCCCCCCHHHHHHHHHHHHCCCHHHHHEEHCCCCEEECCCCCCHHHHHHHHHHHHHHH
LVPDIDLEEQYLTLDPPGGLIPGL
HCCCCCCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12381787 [H]