Click here to switch to the map view.

The map label for this gene is yrrO [H]

Identifier: 213691267

GI number: 213691267

Start: 406507

End: 408153

Strand: Direct

Name: yrrO [H]

Synonym: Blon_0351

Alternate gene names: 213691267

Gene position: 406507-408153 (Clockwise)

Preceding gene: 213691265

Following gene: 213691268

Centisome position: 14.35

GC content: 60.66

Gene sequence:

>1647_bases
ATGAGAATCCCCACCCGCAAAAAGCCCGAAGTGTTGTCCCCGGCCGGCAACCTGAGGGGTCTGAAAACCGCGGTCGATTA
TGGTGCCGACGCCGTCTACTGCGGCGGCAAAGCCTTCGGCATGCGATCGGCCCCCAAAAACCTAAGTCTTGAGGACTTTG
AGGAAGGCTCGCGCTACGCCCATGAACGCGGCGCCCGCGTGTACGTGACCTGCAACGTGCTGCCGCGCAACAACGAGATC
GAAGCCATGCGCGAGTACGTCGGCCAGCTCAAGGACACCGGCGTGGACGCGCTGATCGTCTCTGACATCGGCGTGATGAT
GATGGCCCGCCAAGTGGCTCCGAACCTGGAATTGCATGTCTCCACGCAGGCCGGCGTCACCAATTACCAAGCTGCGAACG
CCTTCTATGAGCTTGGCGCTCGCCGTGTGGTGTTGGCCCGCGAGATGGACTTGCAGGCCGTGCGTGATATTCGCGCCAAC
ATTCCCGGTGACCTCGACATCGAATGCTTCGTGCATGGCGCGATGTGCATGGCCTTCTCCGGCCGCTGCCTGTTCTCCAA
CTATCTGACCGGCCGTGATGGCAATCACGGCGAATGCGCCCAGCCATGCCGCTGGAAATATTCGATCGTGGAAGAGAAAC
GCCCCGGCCAGTACTTCCCGATCGAACAGACCGAGAACGGCGCCTATCTGTTCAATTCGCAGGACATGAATATGCTGGGG
CACTTGGATGATTTGATTGACTCCGGTGCCACCAGCCTCAAAATCGAAGGCCGCGCGAAAAGCGCCTACTATATCGCCGC
CATGACCAACGCCTACAAAACCGCGGTTAATGAATACATGATTCAACGCGGTTTTGAAGACGCTGATGGCAATGTTCTGA
AGCCTTTCCGTGACCGTGTGATTCGCCAGGGCGACCCCGATTTTGGCCAAGGAACCGAAGATCAAGTGATGCGCAATGCC
GATGCCGCGTTCGCCGGTGTGGCCGATGAGGGATATGACCGTGGCTCTGATACTGCGGTTGCCGATTCGGTCGCCAGCTC
GGTTGCCGCAGAACGTGACCGCGTGACGGTTGCTGATGCCGCCGACTCAACTGCCTCTGGTACGCCGGCCGGCACCGCCG
TCGAACCCGACGGCATGAGCTCTCACGCCCGTTCCACGCGCCGCAAGTCCAACACCGCGGTCGAACAGATCGAGACCGAT
TGGAAGCATGCGGCCGTTCGCCCGGCCCCACACGTCGAACTGCCCGAATGGCTGCTCGAGGAAACCGACAAGGTGGCCCA
CCGCGACTACTCCACCGGCTTCTACTACCCGGAGCACAAGGTCACACAGAACACCGACCGCTCCGCCTACTTCCGCTCAT
GGCTGGTAGTGGGCGAAGTGCTGAGCTGGAGCGCGGACGAAGACGGACGTGTCACGCTGATGAGCCGTAACAAGATCGAG
CCAGGTCAACAGGTCGAATTCCTGCTGCCTGGCGAGAGACCATTGGTCTTTACCGTGCCGGAAACCGGCCTGCGCGATGC
CGATGGCGCGCCAGTACCCGCCATCAATAATCCGGCGCACGTGTTCTCGATGCCCTGCCCACACCAGGTGCCCATCAACG
CCGCCATCCGCTCGCGCACCAAAAAGCCCACCCTCAAAGCCGAATAA

Upstream 100 bases:

>100_bases
GAACACGCTCACGATATCGATCTTCATGTTATCCAGCCTAACGGTAGCCCCGCCCGCATTACACGGCCACCACTACACTA
TTGCGGTGATGAATACGACG

Downstream 100 bases:

>100_bases
CCTACCACTCCGCCCCCTCTGGCGGAGGGCTGTCAGCCGTAGGCTGACTGGGGTGGTCATGGGAATCATGAACACCGCCC
GCACCCAAGAAAGAATGCCT

Product: peptidase U32

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 548; Mature: 548

Protein sequence:

>548_residues
MRIPTRKKPEVLSPAGNLRGLKTAVDYGADAVYCGGKAFGMRSAPKNLSLEDFEEGSRYAHERGARVYVTCNVLPRNNEI
EAMREYVGQLKDTGVDALIVSDIGVMMMARQVAPNLELHVSTQAGVTNYQAANAFYELGARRVVLAREMDLQAVRDIRAN
IPGDLDIECFVHGAMCMAFSGRCLFSNYLTGRDGNHGECAQPCRWKYSIVEEKRPGQYFPIEQTENGAYLFNSQDMNMLG
HLDDLIDSGATSLKIEGRAKSAYYIAAMTNAYKTAVNEYMIQRGFEDADGNVLKPFRDRVIRQGDPDFGQGTEDQVMRNA
DAAFAGVADEGYDRGSDTAVADSVASSVAAERDRVTVADAADSTASGTPAGTAVEPDGMSSHARSTRRKSNTAVEQIETD
WKHAAVRPAPHVELPEWLLEETDKVAHRDYSTGFYYPEHKVTQNTDRSAYFRSWLVVGEVLSWSADEDGRVTLMSRNKIE
PGQQVEFLLPGERPLVFTVPETGLRDADGAPVPAINNPAHVFSMPCPHQVPINAAIRSRTKKPTLKAE

Sequences:

>Translated_548_residues
MRIPTRKKPEVLSPAGNLRGLKTAVDYGADAVYCGGKAFGMRSAPKNLSLEDFEEGSRYAHERGARVYVTCNVLPRNNEI
EAMREYVGQLKDTGVDALIVSDIGVMMMARQVAPNLELHVSTQAGVTNYQAANAFYELGARRVVLAREMDLQAVRDIRAN
IPGDLDIECFVHGAMCMAFSGRCLFSNYLTGRDGNHGECAQPCRWKYSIVEEKRPGQYFPIEQTENGAYLFNSQDMNMLG
HLDDLIDSGATSLKIEGRAKSAYYIAAMTNAYKTAVNEYMIQRGFEDADGNVLKPFRDRVIRQGDPDFGQGTEDQVMRNA
DAAFAGVADEGYDRGSDTAVADSVASSVAAERDRVTVADAADSTASGTPAGTAVEPDGMSSHARSTRRKSNTAVEQIETD
WKHAAVRPAPHVELPEWLLEETDKVAHRDYSTGFYYPEHKVTQNTDRSAYFRSWLVVGEVLSWSADEDGRVTLMSRNKIE
PGQQVEFLLPGERPLVFTVPETGLRDADGAPVPAINNPAHVFSMPCPHQVPINAAIRSRTKKPTLKAE
>Mature_548_residues
MRIPTRKKPEVLSPAGNLRGLKTAVDYGADAVYCGGKAFGMRSAPKNLSLEDFEEGSRYAHERGARVYVTCNVLPRNNEI
EAMREYVGQLKDTGVDALIVSDIGVMMMARQVAPNLELHVSTQAGVTNYQAANAFYELGARRVVLAREMDLQAVRDIRAN
IPGDLDIECFVHGAMCMAFSGRCLFSNYLTGRDGNHGECAQPCRWKYSIVEEKRPGQYFPIEQTENGAYLFNSQDMNMLG
HLDDLIDSGATSLKIEGRAKSAYYIAAMTNAYKTAVNEYMIQRGFEDADGNVLKPFRDRVIRQGDPDFGQGTEDQVMRNA
DAAFAGVADEGYDRGSDTAVADSVASSVAAERDRVTVADAADSTASGTPAGTAVEPDGMSSHARSTRRKSNTAVEQIETD
WKHAAVRPAPHVELPEWLLEETDKVAHRDYSTGFYYPEHKVTQNTDRSAYFRSWLVVGEVLSWSADEDGRVTLMSRNKIE
PGQQVEFLLPGERPLVFTVPETGLRDADGAPVPAINNPAHVFSMPCPHQVPINAAIRSRTKKPTLKAE

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI1788397, Length=336, Percent_Identity=34.2261904761905, Blast_Score=212, Evalue=4e-56,
Organism=Escherichia coli, GI87081910, Length=275, Percent_Identity=37.4545454545455, Blast_Score=188, Evalue=9e-49,
Organism=Escherichia coli, GI1789548, Length=294, Percent_Identity=28.5714285714286, Blast_Score=125, Evalue=9e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001539 [H]

Pfam domain/function: PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 60276; Mature: 60276

Theoretical pI: Translated: 5.30; Mature: 5.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIPTRKKPEVLSPAGNLRGLKTAVDYGADAVYCGGKAFGMRSAPKNLSLEDFEEGSRYA
CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
HERGARVYVTCNVLPRNNEIEAMREYVGQLKDTGVDALIVSDIGVMMMARQVAPNLELHV
HHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCEEEE
STQAGVTNYQAANAFYELGARRVVLAREMDLQAVRDIRANIPGDLDIECFVHGAMCMAFS
ECCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCC
GRCLFSNYLTGRDGNHGECAQPCRWKYSIVEEKRPGQYFPIEQTENGAYLFNSQDMNMLG
CCEEEECCCCCCCCCCCCCCCCCCEEEHHHHCCCCCCCCCCEECCCCEEEECCCCCHHHH
HLDDLIDSGATSLKIEGRAKSAYYIAAMTNAYKTAVNEYMIQRGFEDADGNVLKPFRDRV
HHHHHHHCCCCEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHH
IRQGDPDFGQGTEDQVMRNADAAFAGVADEGYDRGSDTAVADSVASSVAAERDRVTVADA
HHCCCCCCCCCCHHHHHHCCCHHEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECC
ADSTASGTPAGTAVEPDGMSSHARSTRRKSNTAVEQIETDWKHAAVRPAPHVELPEWLLE
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
ETDKVAHRDYSTGFYYPEHKVTQNTDRSAYFRSWLVVGEVLSWSADEDGRVTLMSRNKIE
HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
PGQQVEFLLPGERPLVFTVPETGLRDADGAPVPAINNPAHVFSMPCPHQVPINAAIRSRT
CCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCC
KKPTLKAE
CCCCCCCC
>Mature Secondary Structure
MRIPTRKKPEVLSPAGNLRGLKTAVDYGADAVYCGGKAFGMRSAPKNLSLEDFEEGSRYA
CCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHH
HERGARVYVTCNVLPRNNEIEAMREYVGQLKDTGVDALIVSDIGVMMMARQVAPNLELHV
HHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCCEEEE
STQAGVTNYQAANAFYELGARRVVLAREMDLQAVRDIRANIPGDLDIECFVHGAMCMAFS
ECCCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCC
GRCLFSNYLTGRDGNHGECAQPCRWKYSIVEEKRPGQYFPIEQTENGAYLFNSQDMNMLG
CCEEEECCCCCCCCCCCCCCCCCCEEEHHHHCCCCCCCCCCEECCCCEEEECCCCCHHHH
HLDDLIDSGATSLKIEGRAKSAYYIAAMTNAYKTAVNEYMIQRGFEDADGNVLKPFRDRV
HHHHHHHCCCCEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHCCCCCCCCCEECHHHHHH
IRQGDPDFGQGTEDQVMRNADAAFAGVADEGYDRGSDTAVADSVASSVAAERDRVTVADA
HHCCCCCCCCCCHHHHHHCCCHHEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECC
ADSTASGTPAGTAVEPDGMSSHARSTRRKSNTAVEQIETDWKHAAVRPAPHVELPEWLLE
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
ETDKVAHRDYSTGFYYPEHKVTQNTDRSAYFRSWLVVGEVLSWSADEDGRVTLMSRNKIE
HHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC
PGQQVEFLLPGERPLVFTVPETGLRDADGAPVPAINNPAHVFSMPCPHQVPINAAIRSRT
CCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCC
KKPTLKAE
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]