| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
Click here to switch to the map view.
The map label for this gene is recG [H]
Identifier: 213691255
GI number: 213691255
Start: 391297
End: 394131
Strand: Direct
Name: recG [H]
Synonym: Blon_0339
Alternate gene names: 213691255
Gene position: 391297-394131 (Clockwise)
Preceding gene: 213691254
Following gene: 213691257
Centisome position: 13.81
GC content: 64.44
Gene sequence:
>2835_bases ATGAGCATCACTATGGACACCACTCTCGCTTCGCTGGTCACCAACAAGCGTCGCGTGTCCGCGCTCAAATCGCTGGGAAT CGTCACTGTCGGCGACGCCCTGACCTACTATCCCTTCCGCGTCACCGAACCGGTGCCGCTTCGCGCCATCCGCGAGGCCG CACCCGGCCAGCAGATGGCATTTGCCGCCGTGATACGAGACATGCGCGTGGTGCCGATGAACGCTCGCCGCGGCTACCGA CTCGAGGCGGCGGTTGACGACGCCGACTTTGCCCGGTCTCGTCGCGTACCCGGCAGCACGGCTCGGCTCACGTTCTTTTC GTATCGTAAATCGTATGTGGATTGGGTCAGCATGCGGCTGCGCGCCGGCACGTCTGTGGTGGTCTCCGGTATGCCCAGCG AATACATGGGTCAGCTGCAATTCACGCACCCCGAAATCCTCACTGTCGCGCCCGGGTCGGCCGGAACAGGAGCGGGGCTT GAGGGTTACGCTCGGGGCGCGGCATCCGGCAATGGCGCGTTTGCGGGAAGTACCGATCCGTATGCCAGTGCGCAGTCCGC GTATCCGCCGGCCGCGGCTGCCCCTTCCGGGGCCGCGCTGAAATACGACGCCGATACCGTGCAAGAGGCGCTTACCCGCG TCTGCCGGCCCCGCCCGGTATATCACGCCAGTTCGCGTATTTCATCCGAACATATTCATGAGACGATTCTGGGATTGCTG TGGATGATGGGGGCCCGCACGTCATCCACGCCTGACGGGCAACTCGCTGGCGCTGGGTCAGTCGACATCGTGGCTCCCAC GACCGACACCATCGCCGTCCAAAACGGGGAAGAGAAGTCCGGCACGACCGCCGAATCCGGTGCTGAGGCGCTCTCCCGAT CCATCCCAGATGTGCTGCCCGAATCGGTGCGCAAGGCCAAGAACCTCATGCATCGGGCTGAGGCGTTCCTGGCCATTCAT GATCCGGCCTCCACGGCCCGGTTCAAGGAAGCCATCGAAACCCTGCGCTATGAGGAGGCTTTCGTTTCGCAGACCTCGCT GCTGAAGGCTCGACAGCACGCGCACAAGTCATCGGCGCATCCTTGCCCGCTGAACGAGGCGCTGGAAACAGCTCGAGCGT CGGTGGGCGAAGCGGCCGCGGAGCCAAGCGCACAACCGGGAGCATCGGAGCGCGGTGCTGCGACCAATCTGCCTGATCTG CCCAATTTGCGTGACCGTTTCATCGCCTCGCTGCCGTTCACACTGACAGCCGGGCAGAGTCAGGTGGTGGACGACATCGC GGCCGATCTTGAACGTGACTGGCCCATGCAACGTCTGTTGCAGGGCGAAGTCGGCTCCGGCAAAACCGTGGTGGCGCTCG CGGCCATGCTGCAGGCGGTCGGCGCCGGCTATCAGGCGGTGCTGGTGGCTCCCACTCAGGTGCTTGCCGAACAGCATTAC GAGACCATCAGCAAGATGGTGTCGGGGCTGGCCCTTGCACAGCCGGGTGCCAAGGAGACCGATGCCGCGGCCGACGTTGA GGGCGCGATGGGCGCGTCCAGTGCTTCGACAGTCTCTTCTTCCAAGGTGTCTGCGGAAATTCCCGTCACCCTGCTGACCG GTGGCATGAAGCTTGCTGCGCGACGTAAAGCACTTGCTGCGGCCGCCAGTGGCGAGCCGGGCATTATCGTGGCCACGCAC GCGGCATTTTCCAAGACCTTCCAAGCCCCGCACTTGGCCTTGGTGGTAATCGACGAGCAGCACCGGTTCGGTGTGGAACA GCGCGAAAGTCTCAACGCCAAAACCGACGACGGCACCACGCCGCATCTACTGGTGATGACCGCCACGCCCATCCCGCGCA CTGCCGCCATGACTTGGTTCGGTGATCTCGATATTTCCTGGCTCACCGAATTGCCCGGCGGCCGCAAACCGATTCGCACC GTGGTGGTCAATGAGGCCGACGCCGCCACCATGGGGCGTATGTTCGCGCACATTCGCGCGCGAGTCGACGCGGGGGAGCG GGCCTATATCGTGTGCCCGCGCATTGATGCGGATGATGAGGAGAACGAAGGCGGTTCCGGCGTTTCGTCAGCAGCCGGTT CTGCCAGCGGACGCGCCGCAGCATCTGGTTCCAGCGCCCGCACAGCTGCGGGCGGCCGTGCGACGCGCGCGGCGGCCGAC GCCATCGGCATCGACGATCCCTACGAAACCTTCGACGAGAACGGCGAAACCGTGGCTCGCCCGCCATTGCATGCGGTGGC CGAAATCGCCGACCGGTTGCAGAAACTCCCGCAATTCCAAGGCATTCGGTTTGCGACTCTGACCGGCCGCGACAAGGATG ACGTCAAAACCCAGGTCATGGCCGATTTTGTCGGCGGCGAGACTCCGATCCTGGTGTCCACCACGGTGATCGAAGTCGGC GTGGACGTCAAGCAGGCCAGCTGCATCGTCATCTTTGATGCCGACCGATACGGCCTCTCTCAGTTGCATCAGCTGCGCGG CCGCGTGGGACGTGGCGGCACCAACTCGTGGGCGTTCCTTATTTCCCGTGCGGAACCCGGCTCCCCGGCCGAGCAACGGC TCGAAGTGATTCACCACTCGCTCGACGGTGCCGAAATCGCCCAAGCCGACTTGGAATTCCGCGGTGCCGGCGATGTGCTC GGCGACGCCCAATCCGGCGGCAAGTCCAGCCTGAAGCTCCTGCGCGTGGTCAAGGACGCCGACATGATCGCCGACGCCCG CACCCGTGCCGAGCAGCTTCTGGCCGCCGACCCCGAACTGGCAGACGAGGTCCAACTCGCCGGTGCCGTCCTCGACTTCA CCCGAGGCAACGAAACCTTCCTGACCTCCAGCTGA
Upstream 100 bases:
>100_bases AATCGCGTACTAACGTGGAGCAAAACCCGTTTGAGCTTCGGCTCAGCGGGTTTTGTTGTTTCTGCGGCCTAAAGGGGCCG TGCGAATAGAATAGGCCAAT
Downstream 100 bases:
>100_bases GGCTAGGGCTGCGCCCCCCCCCGTAATCGCACGATATTGTATTTTCATCTGGTAAACAGAAGTAAATGCTTGTGCCAGAG ACGGATTGCATATGCATGGG
Product: DEAD/DEAH box helicase domain protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 944; Mature: 943
Protein sequence:
>944_residues MSITMDTTLASLVTNKRRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMAFAAVIRDMRVVPMNARRGYR LEAAVDDADFARSRRVPGSTARLTFFSYRKSYVDWVSMRLRAGTSVVVSGMPSEYMGQLQFTHPEILTVAPGSAGTGAGL EGYARGAASGNGAFAGSTDPYASAQSAYPPAAAAPSGAALKYDADTVQEALTRVCRPRPVYHASSRISSEHIHETILGLL WMMGARTSSTPDGQLAGAGSVDIVAPTTDTIAVQNGEEKSGTTAESGAEALSRSIPDVLPESVRKAKNLMHRAEAFLAIH DPASTARFKEAIETLRYEEAFVSQTSLLKARQHAHKSSAHPCPLNEALETARASVGEAAAEPSAQPGASERGAATNLPDL PNLRDRFIASLPFTLTAGQSQVVDDIAADLERDWPMQRLLQGEVGSGKTVVALAAMLQAVGAGYQAVLVAPTQVLAEQHY ETISKMVSGLALAQPGAKETDAAADVEGAMGASSASTVSSSKVSAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATH AAFSKTFQAPHLALVVIDEQHRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRT VVVNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEENEGGSGVSSAAGSASGRAAASGSSARTAAGGRATRAAAD AIGIDDPYETFDENGETVARPPLHAVAEIADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFVGGETPILVSTTVIEVG VDVKQASCIVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQADLEFRGAGDVL GDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLAADPELADEVQLAGAVLDFTRGNETFLTSS
Sequences:
>Translated_944_residues MSITMDTTLASLVTNKRRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMAFAAVIRDMRVVPMNARRGYR LEAAVDDADFARSRRVPGSTARLTFFSYRKSYVDWVSMRLRAGTSVVVSGMPSEYMGQLQFTHPEILTVAPGSAGTGAGL EGYARGAASGNGAFAGSTDPYASAQSAYPPAAAAPSGAALKYDADTVQEALTRVCRPRPVYHASSRISSEHIHETILGLL WMMGARTSSTPDGQLAGAGSVDIVAPTTDTIAVQNGEEKSGTTAESGAEALSRSIPDVLPESVRKAKNLMHRAEAFLAIH DPASTARFKEAIETLRYEEAFVSQTSLLKARQHAHKSSAHPCPLNEALETARASVGEAAAEPSAQPGASERGAATNLPDL PNLRDRFIASLPFTLTAGQSQVVDDIAADLERDWPMQRLLQGEVGSGKTVVALAAMLQAVGAGYQAVLVAPTQVLAEQHY ETISKMVSGLALAQPGAKETDAAADVEGAMGASSASTVSSSKVSAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATH AAFSKTFQAPHLALVVIDEQHRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRT VVVNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEENEGGSGVSSAAGSASGRAAASGSSARTAAGGRATRAAAD AIGIDDPYETFDENGETVARPPLHAVAEIADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFVGGETPILVSTTVIEVG VDVKQASCIVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQADLEFRGAGDVL GDAQSGGKSSLKLLRVVKDADMIADARTRAEQLLAADPELADEVQLAGAVLDFTRGNETFLTSS >Mature_943_residues SITMDTTLASLVTNKRRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMAFAAVIRDMRVVPMNARRGYRL EAAVDDADFARSRRVPGSTARLTFFSYRKSYVDWVSMRLRAGTSVVVSGMPSEYMGQLQFTHPEILTVAPGSAGTGAGLE GYARGAASGNGAFAGSTDPYASAQSAYPPAAAAPSGAALKYDADTVQEALTRVCRPRPVYHASSRISSEHIHETILGLLW MMGARTSSTPDGQLAGAGSVDIVAPTTDTIAVQNGEEKSGTTAESGAEALSRSIPDVLPESVRKAKNLMHRAEAFLAIHD PASTARFKEAIETLRYEEAFVSQTSLLKARQHAHKSSAHPCPLNEALETARASVGEAAAEPSAQPGASERGAATNLPDLP NLRDRFIASLPFTLTAGQSQVVDDIAADLERDWPMQRLLQGEVGSGKTVVALAAMLQAVGAGYQAVLVAPTQVLAEQHYE TISKMVSGLALAQPGAKETDAAADVEGAMGASSASTVSSSKVSAEIPVTLLTGGMKLAARRKALAAAASGEPGIIVATHA AFSKTFQAPHLALVVIDEQHRFGVEQRESLNAKTDDGTTPHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTV VVNEADAATMGRMFAHIRARVDAGERAYIVCPRIDADDEENEGGSGVSSAAGSASGRAAASGSSARTAAGGRATRAAADA IGIDDPYETFDENGETVARPPLHAVAEIADRLQKLPQFQGIRFATLTGRDKDDVKTQVMADFVGGETPILVSTTVIEVGV DVKQASCIVIFDADRYGLSQLHQLRGRVGRGGTNSWAFLISRAEPGSPAEQRLEVIHHSLDGAEIAQADLEFRGAGDVLG DAQSGGKSSLKLLRVVKDADMIADARTRAEQLLAADPELADEVQLAGAVLDFTRGNETFLTSS
Specific function: Critical role in recombination and DNA repair. Help process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3' to 5' polarity. RecG unwind branched dup
COG id: COG1200
COG function: function code LK; RecG-like helicase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367254, Length=444, Percent_Identity=32.6576576576577, Blast_Score=168, Evalue=1e-42, Organism=Escherichia coli, GI1787357, Length=491, Percent_Identity=28.1059063136456, Blast_Score=142, Evalue=1e-34,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR004609 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR016027 [H]
Pfam domain/function: PF00270 DEAD; PF00271 Helicase_C [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 99400; Mature: 99269
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSITMDTTLASLVTNKRRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMA CEEEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCEEECCCCCHHHHHHCCCCHHHH FAAVIRDMRVVPMNARRGYRLEAAVDDADFARSRRVPGSTARLTFFSYRKSYVDWVSMRL HHHHHHCCEEEEECCCCCEEEEEECCCHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHH RAGTSVVVSGMPSEYMGQLQFTHPEILTVAPGSAGTGAGLEGYARGAASGNGAFAGSTDP HCCCEEEEECCCHHHHCCEEECCCCEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC YASAQSAYPPAAAAPSGAALKYDADTVQEALTRVCRPRPVYHASSRISSEHIHETILGLL CCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHH WMMGARTSSTPDGQLAGAGSVDIVAPTTDTIAVQNGEEKSGTTAESGAEALSRSIPDVLP HHHCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHCHHHHH ESVRKAKNLMHRAEAFLAIHDPASTARFKEAIETLRYEEAFVSQTSLLKARQHAHKSSAH HHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PCPLNEALETARASVGEAAAEPSAQPGASERGAATNLPDLPNLRDRFIASLPFTLTAGQS CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEECCCH QVVDDIAADLERDWPMQRLLQGEVGSGKTVVALAAMLQAVGAGYQAVLVAPTQVLAEQHY HHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHH ETISKMVSGLALAQPGAKETDAAADVEGAMGASSASTVSSSKVSAEIPVTLLTGGMKLAA HHHHHHHHHHHHCCCCCCCCCCHHCCHHHCCCCCHHHCCCCCCCCCCCEEEEECCHHHHH RRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQHRFGVEQRESLNAKTDDGTT HHHHHHHHCCCCCCEEEEECHHHHHHCCCCCEEEEEECCHHHCCCHHHHHCCCCCCCCCC PHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTVVVNEADAATMGRMFAHIRA CEEEEEECCCCCCHHEEEEECCCCHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH RVDAGERAYIVCPRIDADDEENEGGSGVSSAAGSASGRAAASGSSARTAAGGRATRAAAD HCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH AIGIDDPYETFDENGETVARPPLHAVAEIADRLQKLPQFQGIRFATLTGRDKDDVKTQVM HCCCCCCHHHHCCCCCEECCCHHHHHHHHHHHHHHCCHHCCEEEEEECCCCHHHHHHHHH ADFVGGETPILVSTTVIEVGVDVKQASCIVIFDADRYGLSQLHQLRGRVGRGGTNSWAFL HHHHCCCCCEEEEEEEEEECCCEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEE ISRAEPGSPAEQRLEVIHHSLDGAEIAQADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDA EECCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH DMIADARTRAEQLLAADPELADEVQLAGAVLDFTRGNETFLTSS HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCCCEEEECC >Mature Secondary Structure SITMDTTLASLVTNKRRVSALKSLGIVTVGDALTYYPFRVTEPVPLRAIREAAPGQQMA EEEHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCEEECCCCCHHHHHHCCCCHHHH FAAVIRDMRVVPMNARRGYRLEAAVDDADFARSRRVPGSTARLTFFSYRKSYVDWVSMRL HHHHHHCCEEEEECCCCCEEEEEECCCHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHH RAGTSVVVSGMPSEYMGQLQFTHPEILTVAPGSAGTGAGLEGYARGAASGNGAFAGSTDP HCCCEEEEECCCHHHHCCEEECCCCEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCC YASAQSAYPPAAAAPSGAALKYDADTVQEALTRVCRPRPVYHASSRISSEHIHETILGLL CCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHH WMMGARTSSTPDGQLAGAGSVDIVAPTTDTIAVQNGEEKSGTTAESGAEALSRSIPDVLP HHHCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCCCCHHHHHHHHHHHCHHHHH ESVRKAKNLMHRAEAFLAIHDPASTARFKEAIETLRYEEAFVSQTSLLKARQHAHKSSAH HHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PCPLNEALETARASVGEAAAEPSAQPGASERGAATNLPDLPNLRDRFIASLPFTLTAGQS CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCEEEECCCH QVVDDIAADLERDWPMQRLLQGEVGSGKTVVALAAMLQAVGAGYQAVLVAPTQVLAEQHY HHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHH ETISKMVSGLALAQPGAKETDAAADVEGAMGASSASTVSSSKVSAEIPVTLLTGGMKLAA HHHHHHHHHHHHCCCCCCCCCCHHCCHHHCCCCCHHHCCCCCCCCCCCEEEEECCHHHHH RRKALAAAASGEPGIIVATHAAFSKTFQAPHLALVVIDEQHRFGVEQRESLNAKTDDGTT HHHHHHHHCCCCCCEEEEECHHHHHHCCCCCEEEEEECCHHHCCCHHHHHCCCCCCCCCC PHLLVMTATPIPRTAAMTWFGDLDISWLTELPGGRKPIRTVVVNEADAATMGRMFAHIRA CEEEEEECCCCCCHHEEEEECCCCHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH RVDAGERAYIVCPRIDADDEENEGGSGVSSAAGSASGRAAASGSSARTAAGGRATRAAAD HCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH AIGIDDPYETFDENGETVARPPLHAVAEIADRLQKLPQFQGIRFATLTGRDKDDVKTQVM HCCCCCCHHHHCCCCCEECCCHHHHHHHHHHHHHHCCHHCCEEEEEECCCCHHHHHHHHH ADFVGGETPILVSTTVIEVGVDVKQASCIVIFDADRYGLSQLHQLRGRVGRGGTNSWAFL HHHHCCCCCEEEEEEEEEECCCEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEE ISRAEPGSPAEQRLEVIHHSLDGAEIAQADLEFRGAGDVLGDAQSGGKSSLKLLRVVKDA EECCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH DMIADARTRAEQLLAADPELADEVQLAGAVLDFTRGNETFLTSS HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEECCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11234002 [H]