Click here to switch to the map view.

The map label for this gene is rpmB

Identifier: 213691254

GI number: 213691254

Start: 391003

End: 391197

Strand: Direct

Name: rpmB

Synonym: Blon_0338

Alternate gene names: 213691254

Gene position: 391003-391197 (Clockwise)

Preceding gene: 213691251

Following gene: 213691255

Centisome position: 13.8

GC content: 63.59

Gene sequence:

>195_bases
ATGGCAGCTCGTTGCGCAGTGTGCGGCAAGGGACCGCAGACCGGTTTCACCGTTTCCCATTCGCACCGTCGTACCAAGCG
TAGCTTCCGCCCGAACCTGCAGTCTGTGCGCACCACGATTGATGGCGAGAACACTCGCCTGCGCGTGTGCGTCAAGTGCC
TCAAGGCCGGCAAGGTTCAGCGCGTGGCCGCGTGA

Upstream 100 bases:

>100_bases
TTGGGCTATATATTTGTGAAGTTGTGTGTTCGGCATGTCGGGTGAAACCGGCGGTCGAATGCGCGAAAGACTTGACACAT
CAAGGTTAAGGGAGTCCATC

Downstream 100 bases:

>100_bases
ATCGCGTACTAACGTGGAGCAAAACCCGTTTGAGCTTCGGCTCAGCGGGTTTTGTTGTTTCTGCGGCCTAAAGGGGCCGT
GCGAATAGAATAGGCCAATA

Product: 50S ribosomal protein L28

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 64; Mature: 63

Protein sequence:

>64_residues
MAARCAVCGKGPQTGFTVSHSHRRTKRSFRPNLQSVRTTIDGENTRLRVCVKCLKAGKVQRVAA

Sequences:

>Translated_64_residues
MAARCAVCGKGPQTGFTVSHSHRRTKRSFRPNLQSVRTTIDGENTRLRVCVKCLKAGKVQRVAA
>Mature_63_residues
AARCAVCGKGPQTGFTVSHSHRRTKRSFRPNLQSVRTTIDGENTRLRVCVKCLKAGKVQRVAA

Specific function: Unknown

COG id: COG0227

COG function: function code J; Ribosomal protein L28

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L28P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL28_BIFLD (B3DTR5)

Other databases:

- EMBL:   CP000605
- RefSeq:   YP_001955032.1
- ProteinModelPortal:   B3DTR5
- SMR:   B3DTR5
- GeneID:   6364610
- GenomeReviews:   CP000605_GR
- KEGG:   blj:BLD_1088
- HOGENOM:   HBG597003
- OMA:   NACTSCI
- ProtClustDB:   PRK00359
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00373
- InterPro:   IPR001383
- TIGRFAMs:   TIGR00009

Pfam domain/function: PF00830 Ribosomal_L28

EC number: NA

Molecular weight: Translated: 7041; Mature: 6910

Theoretical pI: Translated: 12.03; Mature: 12.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
6.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAARCAVCGKGPQTGFTVSHSHRRTKRSFRPNLQSVRTTIDGENTRLRVCVKCLKAGKVQ
CCCCCCCCCCCCCCCEEECCCHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEE
RVAA
ECCC
>Mature Secondary Structure 
AARCAVCGKGPQTGFTVSHSHRRTKRSFRPNLQSVRTTIDGENTRLRVCVKCLKAGKVQ
CCCCCCCCCCCCCCEEECCCHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCEE
RVAA
ECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA