Click here to switch to the map view.

The map label for this gene is glnR [H]

Identifier: 213691196

GI number: 213691196

Start: 331712

End: 332512

Strand: Reverse

Name: glnR [H]

Synonym: Blon_0278

Alternate gene names: 213691196

Gene position: 332512-331712 (Counterclockwise)

Preceding gene: 213691197

Following gene: 213691195

Centisome position: 11.74

GC content: 61.55

Gene sequence:

>801_bases
GTGACGGATCTTACGTTGATGACTTTCGCCAGCGACCCCGCCACCGTTTTGCCATCACTCGCCCTGCTTTCTCATCGCGT
CCGTGTACTGCCGATGGATGCAGCCAGCTTGGTGAAGATGCCGGAGAACACCATTCTGTTTCTGGATGCACGCGATGATC
TGGCGACCGCCAAAACCTTGTGCCGCCTCATCCACGCTTCCGGCCTATCCACGCCGATCGTACTGGTGCTGACTGAAGGC
GGCTTCACCGTGGTCAACTCCCAGTGGGGCATTGCGGATGTGGTGGTCACCACCGCTTCCCCGGCTGAAGTCGAGGGCCG
ATTGCGATTGGTCTCCGAGCGCGGCAACGCTCCCACAGCCGCAGCAGCCGGTTCTCCCGCCGAATCCACCACCACGGTGG
AAGATGGCCAGATTCGCTCCGGCGACCTCATCGTGGACACCAACGGCTATACCGCCTCCCTGCATGGACGCCCCATCGAT
TTGGCATACAAGGAGTTCGAACTCCTCAAGTACTTGGTCCAGCACCCCGGCCGCGTGTTCACGCGCGCCCAGTTGCTGCA
GGAAGTATGGGGCTACGACTACTACGGTGGCACTCGTACGGTCGACGTGCATATCCGTCGTCTGCGCGCCAAGCTCGGCG
GTGAATACGAACACCTCATCGGCACCGTGCGCAACGTGGGCTACCGATTCGACCCGCCGGAGACGGATAAGGAAACTGCC
GCCGCACAGCAGGCCGCCAAAGCATCCTCTGCCGCCATCGACATCGATGACGATACTCCCGATCTCAACACCGCCGCCTG
A

Upstream 100 bases:

>100_bases
GAATAATGAAAACTTTGCGAAAGCGGCATAACGCCGCTGACGACTCGTACGGCCACACCAAGCAATTGCGTAACACATTG
CAGGATAAAGGGGGATTAGC

Downstream 100 bases:

>100_bases
CAGACCAGCAGCGCTGCAAACTATCAATCATCGACACTACGCCGCTTAGATCCATACGATGAGAGAAACCAAATCCGCGC
GTCTCACGCGCATGCATGAC

Product: response regulator receiver protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MTDLTLMTFASDPATVLPSLALLSHRVRVLPMDAASLVKMPENTILFLDARDDLATAKTLCRLIHASGLSTPIVLVLTEG
GFTVVNSQWGIADVVVTTASPAEVEGRLRLVSERGNAPTAAAAGSPAESTTTVEDGQIRSGDLIVDTNGYTASLHGRPID
LAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHIRRLRAKLGGEYEHLIGTVRNVGYRFDPPETDKETA
AAQQAAKASSAAIDIDDDTPDLNTAA

Sequences:

>Translated_266_residues
MTDLTLMTFASDPATVLPSLALLSHRVRVLPMDAASLVKMPENTILFLDARDDLATAKTLCRLIHASGLSTPIVLVLTEG
GFTVVNSQWGIADVVVTTASPAEVEGRLRLVSERGNAPTAAAAGSPAESTTTVEDGQIRSGDLIVDTNGYTASLHGRPID
LAYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHIRRLRAKLGGEYEHLIGTVRNVGYRFDPPETDKETA
AAQQAAKASSAAIDIDDDTPDLNTAA
>Mature_265_residues
TDLTLMTFASDPATVLPSLALLSHRVRVLPMDAASLVKMPENTILFLDARDDLATAKTLCRLIHASGLSTPIVLVLTEGG
FTVVNSQWGIADVVVTTASPAEVEGRLRLVSERGNAPTAAAAGSPAESTTTVEDGQIRSGDLIVDTNGYTASLHGRPIDL
AYKEFELLKYLVQHPGRVFTRAQLLQEVWGYDYYGGTRTVDVHIRRLRAKLGGEYEHLIGTVRNVGYRFDPPETDKETAA
AQQAAKASSAAIDIDDDTPDLNTAA

Specific function: Activates the transcription of the glnA gene [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786599, Length=142, Percent_Identity=35.2112676056338, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1786784, Length=178, Percent_Identity=29.2134831460674, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788394, Length=215, Percent_Identity=33.0232558139535, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI87082012, Length=89, Percent_Identity=40.4494382022472, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI145693140, Length=178, Percent_Identity=33.1460674157303, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1790860, Length=175, Percent_Identity=33.1428571428571, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789809, Length=178, Percent_Identity=27.5280898876405, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789402, Length=92, Percent_Identity=34.7826086956522, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 28650; Mature: 28518

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLTLMTFASDPATVLPSLALLSHRVRVLPMDAASLVKMPENTILFLDARDDLATAKTL
CCCEEEEEECCCCHHHHHHHHHHHCCEEEEECCHHHHHCCCCCEEEEEECCCCHHHHHHH
CRLIHASGLSTPIVLVLTEGGFTVVNSQWGIADVVVTTASPAEVEGRLRLVSERGNAPTA
HHHHHHCCCCCCEEEEEECCCEEEEECCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCC
AAAGSPAESTTTVEDGQIRSGDLIVDTNGYTASLHGRPIDLAYKEFELLKYLVQHPGRVF
CCCCCCCCCCCCCCCCCEECCCEEEECCCEEEEECCCEEEHHHHHHHHHHHHHHCCCHHH
TRAQLLQEVWGYDYYGGTRTVDVHIRRLRAKLGGEYEHLIGTVRNVGYRFDPPETDKETA
HHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHCCEECCCCCCCHHHH
AAQQAAKASSAAIDIDDDTPDLNTAA
HHHHHHHCCCCEEECCCCCCCCCCCC
>Mature Secondary Structure 
TDLTLMTFASDPATVLPSLALLSHRVRVLPMDAASLVKMPENTILFLDARDDLATAKTL
CCEEEEEECCCCHHHHHHHHHHHCCEEEEECCHHHHHCCCCCEEEEEECCCCHHHHHHH
CRLIHASGLSTPIVLVLTEGGFTVVNSQWGIADVVVTTASPAEVEGRLRLVSERGNAPTA
HHHHHHCCCCCCEEEEEECCCEEEEECCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCC
AAAGSPAESTTTVEDGQIRSGDLIVDTNGYTASLHGRPIDLAYKEFELLKYLVQHPGRVF
CCCCCCCCCCCCCCCCCEECCCEEEECCCEEEEECCCEEEHHHHHHHHHHHHHHCCCHHH
TRAQLLQEVWGYDYYGGTRTVDVHIRRLRAKLGGEYEHLIGTVRNVGYRFDPPETDKETA
HHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHCCEECCCCCCCHHHH
AAQQAAKASSAAIDIDDDTPDLNTAA
HHHHHHHCCCCEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7688332; 12000953 [H]