| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is epsH [H]
Identifier: 213691140
GI number: 213691140
Start: 263073
End: 264107
Strand: Reverse
Name: epsH [H]
Synonym: Blon_0219
Alternate gene names: 213691140
Gene position: 264107-263073 (Counterclockwise)
Preceding gene: 213691141
Following gene: 213691138
Centisome position: 9.32
GC content: 57.58
Gene sequence:
>1035_bases ATGGCCCGCACGGCAAAGACGCTCACCTTTGTGATCCCCGCATACAATATGGAATCCTATCTCGATCGCTGCGTAAGCTC GCTGCTTTCGGCGACGAACACCGACGACATCGAAGTGCTGGTCGTCGACGACGGATCGAAAGACGGCACGCTGGAAATGG CACAGAAATTCGAGGCCCGCTATCCAGGCATCGTGCGCGCCATCCACCAGGAGAACAAGGGCCACGGCGGCGCGGTCAAC ACCGGCATCGCGGCGGCGAACGGCATGTATGTGAAGGTTGTGGACGCGGATGATTGGGTGGACCCCGAATCGCTCGAACA GGTCATGGCCGTGCTGCGCGAAGAGGCCGATTCCACCGAGCCGATCGACATGCTCGTCACCAATTATGTGTATGACAAGG TTGGCAAACGCAACAAGCATGTGGTGAACTTCCGCCATGCCATGAAGGCCGGCGCGCGCCTGACCTGGAACGATCTTGGG CATTTCGGCTTGGCTGAATACATTCTCATGCACGCGCTGACGTACCGCACCGCCGTGGTGCGAGAGTCCGGCATGCAGCT GCCGGAGCACACGTTCTACGTGGACTTCATTTACGCGTACCAGCCGTTCCCGTGGGTGAAGACCATGAAGTATTTGGATA CGCCGTTCTACCACTATTTCATCGGGCGCGACGGGCAAAGCGTGCAGACCGATGTGATGATCCGCCGCGTCGACCAGCTA CGCCTCGTCAACCAGTGCATGGTGCGTGCCACCCCGGAACGCGACACGGTGCCGGACGGCCTGTACCGTTATATGATCCA CTTCCTGGCGATTGAAAGTTCCGTGGCAAGTGTGTTCATGATTTTGTCTCGCGATCCGGAAAATTATGAGAAGAAAAAGG ATATGTGGGACGACATCAAGGCGCACTCCCCCACTATTTACAAGGATGTGCGCAAGAAAGCCATGTCTCGCGCGCTGAAC TTGCGCGGGTCGATCGGTCGTTTCGTGATTCGCAAGGGATATTTCGTGGCGGAACACGTCGTCGGGTTCAACTGA
Upstream 100 bases:
>100_bases CGCAGACCGCACACCGCCCCGCCGGGCCGGGAGACGAAGTGCTACGGTTTGAACAGGAAACTGAACGCAACGACTGAATA TGTGAGGACGAAAGACTTTC
Downstream 100 bases:
>100_bases TCGCGATTTCCGACGATTTGATGGTCAATCGACGGTCTGAATGGCACTATCTGCCTTATATATGGCAGAACTGACGTACG GGGGTGAGGATGCAGTCGTG
Product: glycosyl transferase, family 2
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 344; Mature: 343
Protein sequence:
>344_residues MARTAKTLTFVIPAYNMESYLDRCVSSLLSATNTDDIEVLVVDDGSKDGTLEMAQKFEARYPGIVRAIHQENKGHGGAVN TGIAAANGMYVKVVDADDWVDPESLEQVMAVLREEADSTEPIDMLVTNYVYDKVGKRNKHVVNFRHAMKAGARLTWNDLG HFGLAEYILMHALTYRTAVVRESGMQLPEHTFYVDFIYAYQPFPWVKTMKYLDTPFYHYFIGRDGQSVQTDVMIRRVDQL RLVNQCMVRATPERDTVPDGLYRYMIHFLAIESSVASVFMILSRDPENYEKKKDMWDDIKAHSPTIYKDVRKKAMSRALN LRGSIGRFVIRKGYFVAEHVVGFN
Sequences:
>Translated_344_residues MARTAKTLTFVIPAYNMESYLDRCVSSLLSATNTDDIEVLVVDDGSKDGTLEMAQKFEARYPGIVRAIHQENKGHGGAVN TGIAAANGMYVKVVDADDWVDPESLEQVMAVLREEADSTEPIDMLVTNYVYDKVGKRNKHVVNFRHAMKAGARLTWNDLG HFGLAEYILMHALTYRTAVVRESGMQLPEHTFYVDFIYAYQPFPWVKTMKYLDTPFYHYFIGRDGQSVQTDVMIRRVDQL RLVNQCMVRATPERDTVPDGLYRYMIHFLAIESSVASVFMILSRDPENYEKKKDMWDDIKAHSPTIYKDVRKKAMSRALN LRGSIGRFVIRKGYFVAEHVVGFN >Mature_343_residues ARTAKTLTFVIPAYNMESYLDRCVSSLLSATNTDDIEVLVVDDGSKDGTLEMAQKFEARYPGIVRAIHQENKGHGGAVNT GIAAANGMYVKVVDADDWVDPESLEQVMAVLREEADSTEPIDMLVTNYVYDKVGKRNKHVVNFRHAMKAGARLTWNDLGH FGLAEYILMHALTYRTAVVRESGMQLPEHTFYVDFIYAYQPFPWVKTMKYLDTPFYHYFIGRDGQSVQTDVMIRRVDQLR LVNQCMVRATPERDTVPDGLYRYMIHFLAIESSVASVFMILSRDPENYEKKKDMWDDIKAHSPTIYKDVRKKAMSRALNL RGSIGRFVIRKGYFVAEHVVGFN
Specific function: May be involved in the production of the exopolysaccharide (EPS) component of the extracellular matrix during biofilm formation. EPS is responsible for the adhesion of chains of cells into bundles. Required for biofilm maintenance [H]
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 2 family [H]
Homologues:
Organism=Escherichia coli, GI1790044, Length=226, Percent_Identity=26.9911504424779, Blast_Score=84, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001173 [H]
Pfam domain/function: PF00535 Glycos_transf_2 [H]
EC number: 2.-.-.- [C]
Molecular weight: Translated: 39326; Mature: 39194
Theoretical pI: Translated: 7.12; Mature: 7.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARTAKTLTFVIPAYNMESYLDRCVSSLLSATNTDDIEVLVVDDGSKDGTLEMAQKFEAR CCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHC YPGIVRAIHQENKGHGGAVNTGIAAANGMYVKVVDADDWVDPESLEQVMAVLREEADSTE CCHHHHHHHHCCCCCCCCCCCCEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC PIDMLVTNYVYDKVGKRNKHVVNFRHAMKAGARLTWNDLGHFGLAEYILMHALTYRTAVV CHHHHHHHHHHHHHCCCCCCEEHHHHHHHCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHH RESGMQLPEHTFYVDFIYAYQPFPWVKTMKYLDTPFYHYFIGRDGQSVQTDVMIRRVDQL HHCCCCCCCCEEEEEEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH RLVNQCMVRATPERDTVPDGLYRYMIHFLAIESSVASVFMILSRDPENYEKKKDMWDDIK HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH AHSPTIYKDVRKKAMSRALNLRGSIGRFVIRKGYFVAEHVVGFN CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCC >Mature Secondary Structure ARTAKTLTFVIPAYNMESYLDRCVSSLLSATNTDDIEVLVVDDGSKDGTLEMAQKFEAR CCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHC YPGIVRAIHQENKGHGGAVNTGIAAANGMYVKVVDADDWVDPESLEQVMAVLREEADSTE CCHHHHHHHHCCCCCCCCCCCCEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC PIDMLVTNYVYDKVGKRNKHVVNFRHAMKAGARLTWNDLGHFGLAEYILMHALTYRTAVV CHHHHHHHHHHHHHCCCCCCEEHHHHHHHCCCEEEHHHCCCHHHHHHHHHHHHHHHHHHH RESGMQLPEHTFYVDFIYAYQPFPWVKTMKYLDTPFYHYFIGRDGQSVQTDVMIRRVDQL HHCCCCCCCCEEEEEEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH RLVNQCMVRATPERDTVPDGLYRYMIHFLAIESSVASVFMILSRDPENYEKKKDMWDDIK HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH AHSPTIYKDVRKKAMSRALNLRGSIGRFVIRKGYFVAEHVVGFN CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969506; 9384377 [H]