| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is 213691141
Identifier: 213691141
GI number: 213691141
Start: 264131
End: 265060
Strand: Reverse
Name: 213691141
Synonym: Blon_0220
Alternate gene names: NA
Gene position: 265060-264131 (Counterclockwise)
Preceding gene: 213691147
Following gene: 213691140
Centisome position: 9.36
GC content: 61.83
Gene sequence:
>930_bases ATGACACACATGCCCGATTCACCAGAATCGGACGATACGTGGAGGCGGACGGTCAAGGAGCTATCCACGGGGCGTGAAAA ACTGGACAGCATGGCCAATACATCCAGAATGACGTCGTATCAGCGGCGCGAGCAGCTCATCGAAATCGGTCGTTCGCTGT TCGCGTCGAAGGGTTTTGAAGCAGTGAGCGTGGAGGAGATCGCCGCCACCGCAAAAGTGTCGAAACCCATCGTCTACGAG CATTTCGGAGGCAAGGAGGGCCTGTACGCCGTGGTGGTGGACCGCGAAATGCGCGCGTTGACCGGCACGCTCACCAGCGC GTTGGATGATCCGACCGTGCACCCACGCCAGATCGTGGAACGCACCGCACTCGCACTGCTCACCTATATCGAAGAGGACG CCGAGGGATTCCAGGTACTGGCGCGCGACTCGCCCAGCACCGAACCGTCCGGCTCGTTCAGCTCACTGCTGGGAGACATC GCCGTGCGCGTCGAAGACATCCTTTCCGAAACGTTCAAACGGCAGAAACTCTCCACCAAAGGCGTGCCGTACTATGCGCA GATGCTGGTGGGCATGACCGTGTTCACCGGCCAATACTGGGCGGACCGCCCGAAGGTGAACAAGGAGCAGTTGGCCGCAT ATATCGTGGATCTGGCATGGCATGGGCTGAGCCGGCTCGACTCCAAACCCCAACTGCTCTTCGAAGGTGACAAGGCACGC AAGGAGGCCAGGCGCCGGGCCAAACACCTGGCCGATTCCGACGGCGCCGACCAGGGCCGGTCGAATGAAGTCCGGACGGA TCCCGGTCAGGGTACCGGCGAGGATCCGGAATCTCGGGGCACGGGTTCGGCGGCGCAGACCGCACACCGCCCCGCCGGGC CGGGAGACGAAGTGCTACGGTTTGAACAGGAAACTGAACGCAACGACTGA
Upstream 100 bases:
>100_bases CAAGGTTGGCCAACCATTCTGGTAGACGGTCCACATCACCCCCTTTAATAAAATTTATTATTTATTGAATATATTAAAGC TGCAATGAAGCATTGTCAAT
Downstream 100 bases:
>100_bases ATATGTGAGGACGAAAGACTTTCATGGCCCGCACGGCAAAGACGCTCACCTTTGTGATCCCCGCATACAATATGGAATCC TATCTCGATCGCTGCGTAAG
Product: transcriptional regulator, TetR family
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family; TetR-Family Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator; TetR-Type Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; TetR-Family Protein Regulatory Protein; Transcription Regulator; Transcriptional Regulator Tetr Family; TetR/AcrR Family Transcriptional Regulator
Number of amino acids: Translated: 309; Mature: 308
Protein sequence:
>309_residues MTHMPDSPESDDTWRRTVKELSTGREKLDSMANTSRMTSYQRREQLIEIGRSLFASKGFEAVSVEEIAATAKVSKPIVYE HFGGKEGLYAVVVDREMRALTGTLTSALDDPTVHPRQIVERTALALLTYIEEDAEGFQVLARDSPSTEPSGSFSSLLGDI AVRVEDILSETFKRQKLSTKGVPYYAQMLVGMTVFTGQYWADRPKVNKEQLAAYIVDLAWHGLSRLDSKPQLLFEGDKAR KEARRRAKHLADSDGADQGRSNEVRTDPGQGTGEDPESRGTGSAAQTAHRPAGPGDEVLRFEQETERND
Sequences:
>Translated_309_residues MTHMPDSPESDDTWRRTVKELSTGREKLDSMANTSRMTSYQRREQLIEIGRSLFASKGFEAVSVEEIAATAKVSKPIVYE HFGGKEGLYAVVVDREMRALTGTLTSALDDPTVHPRQIVERTALALLTYIEEDAEGFQVLARDSPSTEPSGSFSSLLGDI AVRVEDILSETFKRQKLSTKGVPYYAQMLVGMTVFTGQYWADRPKVNKEQLAAYIVDLAWHGLSRLDSKPQLLFEGDKAR KEARRRAKHLADSDGADQGRSNEVRTDPGQGTGEDPESRGTGSAAQTAHRPAGPGDEVLRFEQETERND >Mature_308_residues THMPDSPESDDTWRRTVKELSTGREKLDSMANTSRMTSYQRREQLIEIGRSLFASKGFEAVSVEEIAATAKVSKPIVYEH FGGKEGLYAVVVDREMRALTGTLTSALDDPTVHPRQIVERTALALLTYIEEDAEGFQVLARDSPSTEPSGSFSSLLGDIA VRVEDILSETFKRQKLSTKGVPYYAQMLVGMTVFTGQYWADRPKVNKEQLAAYIVDLAWHGLSRLDSKPQLLFEGDKARK EARRRAKHLADSDGADQGRSNEVRTDPGQGTGEDPESRGTGSAAQTAHRPAGPGDEVLRFEQETERND
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34252; Mature: 34121
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHMPDSPESDDTWRRTVKELSTGREKLDSMANTSRMTSYQRREQLIEIGRSLFASKGFE CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC AVSVEEIAATAKVSKPIVYEHFGGKEGLYAVVVDREMRALTGTLTSALDDPTVHPRQIVE HHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCHHHHHH RTALALLTYIEEDAEGFQVLARDSPSTEPSGSFSSLLGDIAVRVEDILSETFKRQKLSTK HHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GVPYYAQMLVGMTVFTGQYWADRPKVNKEQLAAYIVDLAWHGLSRLDSKPQLLFEGDKAR CCHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHH KEARRRAKHLADSDGADQGRSNEVRTDPGQGTGEDPESRGTGSAAQTAHRPAGPGDEVLR HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHH FEQETERND HHHHHCCCC >Mature Secondary Structure THMPDSPESDDTWRRTVKELSTGREKLDSMANTSRMTSYQRREQLIEIGRSLFASKGFE CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC AVSVEEIAATAKVSKPIVYEHFGGKEGLYAVVVDREMRALTGTLTSALDDPTVHPRQIVE HHHHHHHHHHHHHCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCHHHHHH RTALALLTYIEEDAEGFQVLARDSPSTEPSGSFSSLLGDIAVRVEDILSETFKRQKLSTK HHHHHHHHHHHHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC GVPYYAQMLVGMTVFTGQYWADRPKVNKEQLAAYIVDLAWHGLSRLDSKPQLLFEGDKAR CCHHHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHH KEARRRAKHLADSDGADQGRSNEVRTDPGQGTGEDPESRGTGSAAQTAHRPAGPGDEVLR HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHH FEQETERND HHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA