BacMap

Definition	Bifidobacterium longum subsp. infantis ATCC 15697, complete genome.
Accession	NC_011593
Length	2,832,748

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The map label for this gene is ybbA [C]

Identifier: 213691054

GI number: 213691054

Start: 157355

End: 158089

Strand: Reverse

Name: ybbA [C]

Synonym: Blon_0133

Alternate gene names: 213691054

Gene position: 158089-157355 (Counterclockwise)

Preceding gene: 213691055

Following gene: 213691053

Centisome position: 5.58

GC content: 59.46

Gene sequence:

>735_bases
ATGATCGTCTTCGACCATGTGAGCGTCGAGGCAGAAGGCAAACGTATTATTGATGACCTGAGTTGCCAGCTTGACCTTGG
TCTTGCTGGGGGCTCAGGCCCTCGTCGTATTGCCGTCATTGGCGTCAACGGCTCAGGTAAATCCACTTTTCTCCGTCTGA
TCGACGGTCTGGCCAAGCCCACATCGGGCACCATACGTGTCATGGGCTTCGACCCCACACGGCAAGCCAAGCAGCTGCAC
CGCAAAGTGGGGTTCGTGTTCACCGACCCTGACACGCAAATCATCATGCCCACGCCAGCCGAAGACGTGGCCTTTTCGCT
GCGGGGCATGGGGCTGAGCAAATCCGAGTCTTCGGCACTGGTTGACCGTCAGCTGCAATCATTCGGCCTAACGCCTCACG
CTGGTACTCCGGCGCACAGCCTGTCTGGCGGGCAGAAACAAATGCTGGCCCTTGCCGCCGTGCTCGTGCGCAACCCGGGG
CTGGTGCTTGCCGACGAGCCGACCACCATGCTCGATTTGCCCAACGCGACGCGCATCGAAAACCTGCTGATACACGATAT
CGCCTGCCCGCTGATTGTTTCCACCCATAATCTTCGGCTTGCCGCACGCTGCGATATGGCAGTTCGCTTTGCCGATGGGC
ACATTATCGAAACCGGCGAGCCACGCCACGTTATCGCGCGATATCTTGCCGACTGCGGCGTCGCGGACAACGAAGAAGCC
GAGGCATCCCTATGA

Upstream 100 bases:

>100_bases
TTCCCGGTGATATCGCCAAAGTGGTGATTGCCACGTTGATTGCCACCGCGCTGATGCGCGCATACCCGGCCGCATTCCCC
GAATCGTTGCGCGCTAGCAA

Downstream 100 bases:

>100_bases
TTTCGCTGTATATCGCAGGCGATAGCGTGCTGCATCGATGCCCTGCCGCAGTGAAACTCATCGTGTCACTGGTGATGGCA
ACGGTATTGGTGATTCCGCA

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MIVFDHVSVEAEGKRIIDDLSCQLDLGLAGGSGPRRIAVIGVNGSGKSTFLRLIDGLAKPTSGTIRVMGFDPTRQAKQLH
RKVGFVFTDPDTQIIMPTPAEDVAFSLRGMGLSKSESSALVDRQLQSFGLTPHAGTPAHSLSGGQKQMLALAAVLVRNPG
LVLADEPTTMLDLPNATRIENLLIHDIACPLIVSTHNLRLAARCDMAVRFADGHIIETGEPRHVIARYLADCGVADNEEA
EASL

Sequences:

>Translated_244_residues
MIVFDHVSVEAEGKRIIDDLSCQLDLGLAGGSGPRRIAVIGVNGSGKSTFLRLIDGLAKPTSGTIRVMGFDPTRQAKQLH
RKVGFVFTDPDTQIIMPTPAEDVAFSLRGMGLSKSESSALVDRQLQSFGLTPHAGTPAHSLSGGQKQMLALAAVLVRNPG
LVLADEPTTMLDLPNATRIENLLIHDIACPLIVSTHNLRLAARCDMAVRFADGHIIETGEPRHVIARYLADCGVADNEEA
EASL
>Mature_244_residues
MIVFDHVSVEAEGKRIIDDLSCQLDLGLAGGSGPRRIAVIGVNGSGKSTFLRLIDGLAKPTSGTIRVMGFDPTRQAKQLH
RKVGFVFTDPDTQIIMPTPAEDVAFSLRGMGLSKSESSALVDRQLQSFGLTPHAGTPAHSLSGGQKQMLALAAVLVRNPG
LVLADEPTTMLDLPNATRIENLLIHDIACPLIVSTHNLRLAARCDMAVRFADGHIIETGEPRHVIARYLADCGVADNEEA
EASL

Specific function: Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system [H]

COG id: COG1122

COG function: function code P; ABC-type cobalt transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9955963, Length=234, Percent_Identity=29.0598290598291, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI9665248, Length=200, Percent_Identity=29, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI42741659, Length=192, Percent_Identity=31.7708333333333, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI45446740, Length=196, Percent_Identity=27.0408163265306, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI47078218, Length=196, Percent_Identity=27.0408163265306, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI4505771, Length=203, Percent_Identity=30.5418719211823, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI9961250, Length=203, Percent_Identity=30.5418719211823, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI9961252, Length=203, Percent_Identity=30.5418719211823, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI150417984, Length=198, Percent_Identity=27.7777777777778, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI105990541, Length=204, Percent_Identity=29.4117647058824, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI171184400, Length=202, Percent_Identity=30.6930693069307, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI27477115, Length=148, Percent_Identity=31.0810810810811, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI153792144, Length=201, Percent_Identity=25.3731343283582, Blast_Score=68, Evalue=8e-12,
Organism=Homo sapiens, GI116734710, Length=147, Percent_Identity=29.2517006802721, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI21536376, Length=166, Percent_Identity=30.1204819277108, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI27436953, Length=194, Percent_Identity=24.7422680412371, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI31657092, Length=222, Percent_Identity=27.9279279279279, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1786703, Length=191, Percent_Identity=35.0785340314136, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI87081834, Length=189, Percent_Identity=35.4497354497354, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787089, Length=194, Percent_Identity=29.8969072164948, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1787029, Length=235, Percent_Identity=32.7659574468085, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87081782, Length=210, Percent_Identity=31.4285714285714, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI87081791, Length=232, Percent_Identity=30.1724137931034, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1789873, Length=223, Percent_Identity=31.390134529148, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787712, Length=235, Percent_Identity=29.7872340425532, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87081709, Length=225, Percent_Identity=29.3333333333333, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787370, Length=219, Percent_Identity=32.4200913242009, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI1787105, Length=187, Percent_Identity=32.0855614973262, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1790739, Length=230, Percent_Identity=28.695652173913, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1786398, Length=188, Percent_Identity=32.4468085106383, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788225, Length=209, Percent_Identity=32.0574162679426, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787164, Length=219, Percent_Identity=31.9634703196347, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789032, Length=198, Percent_Identity=28.2828282828283, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788761, Length=221, Percent_Identity=32.579185520362, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786319, Length=204, Percent_Identity=26.9607843137255, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1789962, Length=236, Percent_Identity=27.9661016949153, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI48994943, Length=199, Percent_Identity=31.6582914572864, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI145693107, Length=202, Percent_Identity=30.6930693069307, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1786803, Length=208, Percent_Identity=27.8846153846154, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1787547, Length=204, Percent_Identity=27.4509803921569, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787500, Length=197, Percent_Identity=29.9492385786802, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786872, Length=187, Percent_Identity=30.4812834224599, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789891, Length=197, Percent_Identity=31.4720812182741, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786253, Length=200, Percent_Identity=31, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786563, Length=232, Percent_Identity=25.8620689655172, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788450, Length=239, Percent_Identity=28.4518828451883, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1790467, Length=205, Percent_Identity=30.7317073170732, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788210, Length=193, Percent_Identity=29.5336787564767, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790162, Length=198, Percent_Identity=31.3131313131313, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786345, Length=234, Percent_Identity=27.7777777777778, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788165, Length=224, Percent_Identity=26.7857142857143, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787758, Length=198, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1789672, Length=197, Percent_Identity=27.9187817258883, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367384, Length=220, Percent_Identity=29.5454545454545, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1788644, Length=199, Percent_Identity=29.6482412060301, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789963, Length=248, Percent_Identity=27.0161290322581, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787112, Length=228, Percent_Identity=28.5087719298246, Blast_Score=61, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI212646699, Length=202, Percent_Identity=31.1881188118812, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17558664, Length=224, Percent_Identity=29.4642857142857, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI25146777, Length=202, Percent_Identity=30.1980198019802, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71992285, Length=206, Percent_Identity=27.1844660194175, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17559834, Length=171, Percent_Identity=30.4093567251462, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=199, Percent_Identity=30.6532663316583, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=199, Percent_Identity=30.6532663316583, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=199, Percent_Identity=30.6532663316583, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=199, Percent_Identity=28.643216080402, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=199, Percent_Identity=27.1356783919598, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17511077, Length=222, Percent_Identity=25.2252252252252, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI115533608, Length=203, Percent_Identity=25.1231527093596, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17567269, Length=203, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17567265, Length=212, Percent_Identity=27.3584905660377, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=199, Percent_Identity=27.1356783919598, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=202, Percent_Identity=28.7128712871287, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17565938, Length=231, Percent_Identity=23.8095238095238, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI193208177, Length=205, Percent_Identity=29.2682926829268, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6320874, Length=201, Percent_Identity=27.8606965174129, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323959, Length=205, Percent_Identity=29.2682926829268, Blast_Score=63, Evalue=5e-11,
Organism=Drosophila melanogaster, GI17136662, Length=218, Percent_Identity=30.2752293577982, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24666092, Length=164, Percent_Identity=29.8780487804878, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI28573573, Length=184, Percent_Identity=32.0652173913043, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28573571, Length=184, Percent_Identity=32.0652173913043, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24641565, Length=196, Percent_Identity=27.5510204081633, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI28574744, Length=149, Percent_Identity=36.241610738255, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI281363262, Length=198, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24653245, Length=198, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24643674, Length=196, Percent_Identity=23.469387755102, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI85724864, Length=211, Percent_Identity=29.8578199052133, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24580555, Length=211, Percent_Identity=29.8578199052133, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI85816269, Length=211, Percent_Identity=29.8578199052133, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24580553, Length=211, Percent_Identity=29.8578199052133, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI23397593, Length=198, Percent_Identity=28.7878787878788, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24659289, Length=203, Percent_Identity=27.0935960591133, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24648314, Length=137, Percent_Identity=29.1970802919708, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI28574533, Length=182, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI85726357, Length=214, Percent_Identity=27.1028037383178, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 26037; Mature: 26037

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVFDHVSVEAEGKRIIDDLSCQLDLGLAGGSGPRRIAVIGVNGSGKSTFLRLIDGLAKP
CEEEEEEEEECCCCHHHHCCCEEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHCCC
TSGTIRVMGFDPTRQAKQLHRKVGFVFTDPDTQIIMPTPAEDVAFSLRGMGLSKSESSAL
CCCEEEEEECCCCHHHHHHHHHHCEEEECCCCEEEECCCHHHHHHHHHCCCCCCCCHHHH
VDRQLQSFGLTPHAGTPAHSLSGGQKQMLALAAVLVRNPGLVLADEPTTMLDLPNATRIE
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCHHHH
NLLIHDIACPLIVSTHNLRLAARCDMAVRFADGHIIETGEPRHVIARYLADCGVADNEEA
HHHHHHHCCCEEEECCCEEEEEECCEEEEEECCEEEECCCCHHHHHHHHHHCCCCCCCCC
EASL
CCCC
>Mature Secondary Structure
MIVFDHVSVEAEGKRIIDDLSCQLDLGLAGGSGPRRIAVIGVNGSGKSTFLRLIDGLAKP
CEEEEEEEEECCCCHHHHCCCEEEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHCCC
TSGTIRVMGFDPTRQAKQLHRKVGFVFTDPDTQIIMPTPAEDVAFSLRGMGLSKSESSAL
CCCEEEEEECCCCHHHHHHHHHHCEEEECCCCEEEECCCHHHHHHHHHCCCCCCCCHHHH
VDRQLQSFGLTPHAGTPAHSLSGGQKQMLALAAVLVRNPGLVLADEPTTMLDLPNATRIE
HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCEEEECCCCHHHH
NLLIHDIACPLIVSTHNLRLAARCDMAVRFADGHIIETGEPRHVIARYLADCGVADNEEA
HHHHHHHCCCEEEECCCEEEEEECCEEEEEECCEEEECCCCHHHHHHHHHHCCCCCCCCC
EASL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA