| Definition | Bifidobacterium longum subsp. infantis ATCC 15697, complete genome. |
|---|---|
| Accession | NC_011593 |
| Length | 2,832,748 |
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The map label for this gene is trxB [H]
Identifier: 213690960
GI number: 213690960
Start: 37155
End: 39071
Strand: Direct
Name: trxB [H]
Synonym: Blon_0036
Alternate gene names: 213690960
Gene position: 37155-39071 (Clockwise)
Preceding gene: 213690959
Following gene: 213690963
Centisome position: 1.31
GC content: 64.84
Gene sequence:
>1917_bases ATGACTCAGACCAACAATCTCTATGACGTCGTCGTCATTGGTGGCGGGCCGGCTGGCCTGACGGCCGGCCTGTACCTGGC CCGCGCTCGCTACCGTGTGCTGATTCTTGAAAAAGATGATTTCGGCGGCCAGATCACCATCACCAACGAAGTCGTCAACT ATCCGGGCGTGGGCCGCACCACGGGCCGCGCGCTCACCCAAACCATGCGTCAGCAGGCTCAGGACTTTGGTGCCGAATTC CTCTCCGCCGAAGCCACCGGTCTCGACGTGGATGGTGACATCAAAACCGTGCACACCTCACGCGGCGACCTCAAGACGTT CGGCATCCTCATCGCCACCGGCGCCAGCCCGCGCAAGCTGGGCTTCGAGGGCGAGGCCGAATACGCCGGCCGTGGCGTGG CCTACTGTGCCACCTGCGACGGTGAGTTCTTCACCGGCAAGGAAGTGCTGGTGGTCGGCGGCGGATTCGCCGCGGCCGAG GAATCCGTGTTCCTGACCAAATACGCCTCCAAAGTCACCGTGCTCGTGCGCGAACCGGACTTTACATGCGACGCCGCAGT GGCCGCCGAAGCCAAGAACAACCCGAAGATCGACGTGCGTTATCAGGTCGAGCTGAAGGGCGTCACCGCCGGCCAAGGCG GCCTGCGAGAAGCCTCGATCCTGAACCTTGCCACCGGCCAGACCGAAACGTGGAAGCCCGCCGACGCCGGCACCTTCGGC GTCTTCGTGTTCGCCGGCTATGTGCCCGCCACCGATCTGGTGCGCGGCGTAGTGGAGCTCGATGATCACGGTTACGTGGT CACGCACGACTACCTCGAAACCTCGGTGCCGGGCGTATACGCGGCCGGCGATCTGCGCGTCAAGAACCTGCGCCAGGTGG TCACCGCCACCGCCGACGGCGCGATTGCCGCCGTGGAACTGGAGCGTTATGCCAAGCAGATGAGCGAGAAAACCGGCTTG GTGCCGCCGCGTCCCACTGCTTCCGCTTATGAGGAGTCCGAGGCCAAAGCCGCCTCCGCCGCTTCGGCCGCTGGCACGAC GCCCGCCCCGGCTCCCGCCAAACGCAGCGCCGATGCCGCAGCCGCAGCCAGCGCCGCCAAGAAGTCCGGCGAACTGTTCT CCGCCGCCATCAAGCAGCAGCTTGGCGTGGTCTTCGGCCGCATGACCCGCCCGGTCACCCTTGCCCTTGAGCTGGACAGC ACCCCGCTTTCGGCGGAATTGCAGGGCTTCATCGGCGAGATGGTCGCGTTGTCGAATGGCAAGCTGAACTCGGTCGCCGT CGATGCCGCAGGGCTGATCACGGCGGTGGATGGTGCTTCTGTGCCTACTTCTTTGGTGGTTGGCGAGCCATTGGCCGTCA CTTTGCCGGACGGCACCGAACTGCCCACTTATGGTTCGTTGGACGATTCCGGCCGCGCCACATTCGACGTCGCCGGCGTC CTGCCGCTCGCCCGCCCAACTGTGCGCATCTGCGTGCCGGCTGAGGGCGACGGCAAAGCCGGCAAGGACGGCAATGGTTC ACTGGTCTTCACCGGTCTGGCCTTCCACGGCGTACCTTCCGGCCACGAGTTCAACTCGTTCGTGCTTGGCCTGTACAATG CGGCCGGTCCCGGCCAGCCGCTGGGTGATGACCTGGTCGAACGCGCGAAGTCCATCACGGACCCGCTGAACATCATGATC CTCGTCTCGCTCACCTGCACGATGTGCCCGGAAACCGTGCTTGCTTCCCAGCGCATTGCCTCCCTGAGCCCGGCCGTGCG CGCCGAAGCCTACGACGTCTCGCACTTCCCCGAACTTAAGGACCAGTACGGCGCGATGAGCGTGCCCTGCATCGTCATCA CCCACGCCGACGGCACCCAGCAAGTCGAATTCGGCAAAAAGAGCATCCCCCAAATGCTCGAACTGGTCGGCGCGTAA
Upstream 100 bases:
>100_bases GGAGTGCTCGCGAGAGCTAGCCTGATCCGATATGCTCCCCTCAGTCTCACTACGACAGCTCCCCTCAGAGAGGGGAGCCA GTGTATGTAAGGGAGTTTTC
Downstream 100 bases:
>100_bases GCCGCACGACCTCAGGTACTCAACAGCAACAACAACGATTCTGCCAAAATCGTGACGTACATCGACTGATGCGATCGATG CGCCCGACTCCGGCAGAATC
Product: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
Products: NA
Alternate protein names: TRXR [H]
Number of amino acids: Translated: 638; Mature: 637
Protein sequence:
>638_residues MTQTNNLYDVVVIGGGPAGLTAGLYLARARYRVLILEKDDFGGQITITNEVVNYPGVGRTTGRALTQTMRQQAQDFGAEF LSAEATGLDVDGDIKTVHTSRGDLKTFGILIATGASPRKLGFEGEAEYAGRGVAYCATCDGEFFTGKEVLVVGGGFAAAE ESVFLTKYASKVTVLVREPDFTCDAAVAAEAKNNPKIDVRYQVELKGVTAGQGGLREASILNLATGQTETWKPADAGTFG VFVFAGYVPATDLVRGVVELDDHGYVVTHDYLETSVPGVYAAGDLRVKNLRQVVTATADGAIAAVELERYAKQMSEKTGL VPPRPTASAYEESEAKAASAASAAGTTPAPAPAKRSADAAAAASAAKKSGELFSAAIKQQLGVVFGRMTRPVTLALELDS TPLSAELQGFIGEMVALSNGKLNSVAVDAAGLITAVDGASVPTSLVVGEPLAVTLPDGTELPTYGSLDDSGRATFDVAGV LPLARPTVRICVPAEGDGKAGKDGNGSLVFTGLAFHGVPSGHEFNSFVLGLYNAAGPGQPLGDDLVERAKSITDPLNIMI LVSLTCTMCPETVLASQRIASLSPAVRAEAYDVSHFPELKDQYGAMSVPCIVITHADGTQQVEFGKKSIPQMLELVGA
Sequences:
>Translated_638_residues MTQTNNLYDVVVIGGGPAGLTAGLYLARARYRVLILEKDDFGGQITITNEVVNYPGVGRTTGRALTQTMRQQAQDFGAEF LSAEATGLDVDGDIKTVHTSRGDLKTFGILIATGASPRKLGFEGEAEYAGRGVAYCATCDGEFFTGKEVLVVGGGFAAAE ESVFLTKYASKVTVLVREPDFTCDAAVAAEAKNNPKIDVRYQVELKGVTAGQGGLREASILNLATGQTETWKPADAGTFG VFVFAGYVPATDLVRGVVELDDHGYVVTHDYLETSVPGVYAAGDLRVKNLRQVVTATADGAIAAVELERYAKQMSEKTGL VPPRPTASAYEESEAKAASAASAAGTTPAPAPAKRSADAAAAASAAKKSGELFSAAIKQQLGVVFGRMTRPVTLALELDS TPLSAELQGFIGEMVALSNGKLNSVAVDAAGLITAVDGASVPTSLVVGEPLAVTLPDGTELPTYGSLDDSGRATFDVAGV LPLARPTVRICVPAEGDGKAGKDGNGSLVFTGLAFHGVPSGHEFNSFVLGLYNAAGPGQPLGDDLVERAKSITDPLNIMI LVSLTCTMCPETVLASQRIASLSPAVRAEAYDVSHFPELKDQYGAMSVPCIVITHADGTQQVEFGKKSIPQMLELVGA >Mature_637_residues TQTNNLYDVVVIGGGPAGLTAGLYLARARYRVLILEKDDFGGQITITNEVVNYPGVGRTTGRALTQTMRQQAQDFGAEFL SAEATGLDVDGDIKTVHTSRGDLKTFGILIATGASPRKLGFEGEAEYAGRGVAYCATCDGEFFTGKEVLVVGGGFAAAEE SVFLTKYASKVTVLVREPDFTCDAAVAAEAKNNPKIDVRYQVELKGVTAGQGGLREASILNLATGQTETWKPADAGTFGV FVFAGYVPATDLVRGVVELDDHGYVVTHDYLETSVPGVYAAGDLRVKNLRQVVTATADGAIAAVELERYAKQMSEKTGLV PPRPTASAYEESEAKAASAASAAGTTPAPAPAKRSADAAAAASAAKKSGELFSAAIKQQLGVVFGRMTRPVTLALELDST PLSAELQGFIGEMVALSNGKLNSVAVDAAGLITAVDGASVPTSLVVGEPLAVTLPDGTELPTYGSLDDSGRATFDVAGVL PLARPTVRICVPAEGDGKAGKDGNGSLVFTGLAFHGVPSGHEFNSFVLGLYNAAGPGQPLGDDLVERAKSITDPLNIMIL VSLTCTMCPETVLASQRIASLSPAVRAEAYDVSHFPELKDQYGAMSVPCIVITHADGTQQVEFGKKSIPQMLELVGA
Specific function: Unknown
COG id: COG0492
COG function: function code O; Thioredoxin reductase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787114, Length=310, Percent_Identity=33.2258064516129, Blast_Score=160, Evalue=2e-40, Organism=Escherichia coli, GI87081763, Length=303, Percent_Identity=30.03300330033, Blast_Score=129, Evalue=4e-31, Organism=Saccharomyces cerevisiae, GI6321898, Length=320, Percent_Identity=35.625, Blast_Score=175, Evalue=3e-44, Organism=Saccharomyces cerevisiae, GI6320560, Length=318, Percent_Identity=35.5345911949685, Blast_Score=173, Evalue=8e-44,
Paralogues:
None
Copy number: 808 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013027 - InterPro: IPR008255 - InterPro: IPR001327 - InterPro: IPR000103 - InterPro: IPR005982 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2 [H]
EC number: =1.8.1.9 [H]
Molecular weight: Translated: 66281; Mature: 66149
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTNNLYDVVVIGGGPAGLTAGLYLARARYRVLILEKDDFGGQITITNEVVNYPGVGRT CCCCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCC TGRALTQTMRQQAQDFGAEFLSAEATGLDVDGDIKTVHTSRGDLKTFGILIATGASPRKL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCC GFEGEAEYAGRGVAYCATCDGEFFTGKEVLVVGGGFAAAEESVFLTKYASKVTVLVREPD CCCCCCCCCCCCEEEEEECCCCEECCCEEEEEECCCHHCCCCEEEEEECCEEEEEEECCC FTCDAAVAAEAKNNPKIDVRYQVELKGVTAGQGGLREASILNLATGQTETWKPADAGTFG CCCCHHEEECCCCCCEEEEEEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCEE VFVFAGYVPATDLVRGVVELDDHGYVVTHDYLETSVPGVYAAGDLRVKNLRQVVTATADG EEEEECCCCHHHHHHHHHEECCCCEEEEECHHHCCCCCEEEECCCCHHHHHHHHHHCCCC AIAAVELERYAKQMSEKTGLVPPRPTASAYEESEAKAASAASAAGTTPAPAPAKRSADAA CEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH AAASAAKKSGELFSAAIKQQLGVVFGRMTRPVTLALELDSTPLSAELQGFIGEMVALSNG HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHEECCC KLNSVAVDAAGLITAVDGASVPTSLVVGEPLAVTLPDGTELPTYGSLDDSGRATFDVAGV CCCEEEEECCCEEEEECCCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECC LPLARPTVRICVPAEGDGKAGKDGNGSLVFTGLAFHGVPSGHEFNSFVLGLYNAAGPGQP CCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCC LGDDLVERAKSITDPLNIMILVSLTCTMCPETVLASQRIASLSPAVRAEAYDVSHFPELK CCHHHHHHHHHHCCCCEEEEEEEEHHHHCCHHHHHHHHHHHCCCHHHHEEECCCCCCHHH DQYGAMSVPCIVITHADGTQQVEFGKKSIPQMLELVGA HHCCCEECCEEEEEECCCCCHHHHCHHHHHHHHHHHCC >Mature Secondary Structure TQTNNLYDVVVIGGGPAGLTAGLYLARARYRVLILEKDDFGGQITITNEVVNYPGVGRT CCCCCEEEEEEECCCCHHHHHHHHHHCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCC TGRALTQTMRQQAQDFGAEFLSAEATGLDVDGDIKTVHTSRGDLKTFGILIATGASPRKL HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCCC GFEGEAEYAGRGVAYCATCDGEFFTGKEVLVVGGGFAAAEESVFLTKYASKVTVLVREPD CCCCCCCCCCCCEEEEEECCCCEECCCEEEEEECCCHHCCCCEEEEEECCEEEEEEECCC FTCDAAVAAEAKNNPKIDVRYQVELKGVTAGQGGLREASILNLATGQTETWKPADAGTFG CCCCHHEEECCCCCCEEEEEEEEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCEE VFVFAGYVPATDLVRGVVELDDHGYVVTHDYLETSVPGVYAAGDLRVKNLRQVVTATADG EEEEECCCCHHHHHHHHHEECCCCEEEEECHHHCCCCCEEEECCCCHHHHHHHHHHCCCC AIAAVELERYAKQMSEKTGLVPPRPTASAYEESEAKAASAASAAGTTPAPAPAKRSADAA CEEEHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH AAASAAKKSGELFSAAIKQQLGVVFGRMTRPVTLALELDSTPLSAELQGFIGEMVALSNG HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHEECCC KLNSVAVDAAGLITAVDGASVPTSLVVGEPLAVTLPDGTELPTYGSLDDSGRATFDVAGV CCCEEEEECCCEEEEECCCCCCCEEEECCCEEEECCCCCCCCCCCCCCCCCCEEEEEECC LPLARPTVRICVPAEGDGKAGKDGNGSLVFTGLAFHGVPSGHEFNSFVLGLYNAAGPGQP CCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCC LGDDLVERAKSITDPLNIMILVSLTCTMCPETVLASQRIASLSPAVRAEAYDVSHFPELK CCHHHHHHHHHHCCCCEEEEEEEEHHHHCCHHHHHHHHHHHCCCHHHHEEECCCCCCHHH DQYGAMSVPCIVITHADGTQQVEFGKKSIPQMLELVGA HHCCCEECCEEEEEECCCCCHHHHCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8223622; 2537814 [H]