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The map label for this gene is ltrA [H]

Identifier: 213159018

GI number: 213159018

Start: 3836374

End: 3837348

Strand: Direct

Name: ltrA [H]

Synonym: AB57_3726

Alternate gene names: 213159018

Gene position: 3836374-3837348 (Clockwise)

Preceding gene: 213159017

Following gene: 213159021

Centisome position: 94.71

GC content: 38.26

Gene sequence:

>975_bases
ATGCTTAAGCATTCTAATCTTGAATTTAAATGGGTTGAACAGACATTGATAAGCTCTTTTGATGATTTTTATTATTTCTA
TTTGGTCGTAAAACACGGCGGCTTTAGTGCAGCCAGTGAGGCCGAAAATATTAGTAAATCCAAACTCAGCCGACGCATTA
TTGACCTTGAAAATAAATTTAATGTCAGCCTGATTCAAAGAACAACCCGCCATTTTAAAGTAACCGATTTAGGTCAAGAG
TTTTACGAGGAATGCTGCAAAGTCATTGCTCAAGTTGAATGTGCAGAGAACGTGTTATTAAAGCAAAAAAGTGAGCCTCA
AGGTTTGGTAAAAGTAAGCTGCCCACCTTTAATGATGCATTTTCAAATTAGAAAAATTTTAAATCAGTTTTTAAAAACCT
ACCCTAAAGTTGAAATATCTCTTGAGCTAACCAGCCGTCGAGTAGATATCTTGCATGATGACATCGACCTTGCGATTCGA
ACCAATTTTGAACCGAATGAAGATTCAAATTTAATTGTTCGTGATGTGATTAAAACCGATCATTGTCTGGTGGCTTCGCC
TGAATTACTGCAAGGTCGCACCATTAAGCATTATTCCGAATTACAGGACTTTCCAAGTATTAGCTTAGGCACACAAAAGC
AAAATTATATTTGGCATTTATGCAATATACGTAATGGTGAATCGGTTGATGTGCCTTATCAACCACGAATTAAAAGTAAT
GACTTGGCTGGTGTTTACTATGCCGTAATGGACGGTTTAGGTATTGCCGACCTTCCTTTTTTAACCGTTGAATCGGAAAT
TCGTAAAGGAACACTGGTCCATATACTTCCTGACTGGAAGTCGAATATTGGCATGCTACAACTGGTTTATGTGTCCCGAA
AAGGCCAACGCCTTGTGGTCGAAAAACTCATTGAAACCCTCATTGATGAGCTTCGTCGTTTACCCGAAAGCCATGAAGGA
TATTTGCCGACTTAA

Upstream 100 bases:

>100_bases
TGGGTACATTGTTCTCAAATCATATCCCTGACTACCGTAACCTGATTTCAAGTTACAATCACAACACTAGCCAAAAATAA
GTTCTACTGCCAAGATTAGA

Downstream 100 bases:

>100_bases
ATAAAAAACCGATCATGAATGGGCATGACCGGTTTTTTTGTGAAACATCACATGCAGTATAACTGCATGTTTTCGTTCAG
AACAAAGCGAACTCGCTTTA

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MLKHSNLEFKWVEQTLISSFDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLGQE
FYEECCKVIAQVECAENVLLKQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYPKVEISLELTSRRVDILHDDIDLAIR
TNFEPNEDSNLIVRDVIKTDHCLVASPELLQGRTIKHYSELQDFPSISLGTQKQNYIWHLCNIRNGESVDVPYQPRIKSN
DLAGVYYAVMDGLGIADLPFLTVESEIRKGTLVHILPDWKSNIGMLQLVYVSRKGQRLVVEKLIETLIDELRRLPESHEG
YLPT

Sequences:

>Translated_324_residues
MLKHSNLEFKWVEQTLISSFDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLGQE
FYEECCKVIAQVECAENVLLKQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYPKVEISLELTSRRVDILHDDIDLAIR
TNFEPNEDSNLIVRDVIKTDHCLVASPELLQGRTIKHYSELQDFPSISLGTQKQNYIWHLCNIRNGESVDVPYQPRIKSN
DLAGVYYAVMDGLGIADLPFLTVESEIRKGTLVHILPDWKSNIGMLQLVYVSRKGQRLVVEKLIETLIDELRRLPESHEG
YLPT
>Mature_324_residues
MLKHSNLEFKWVEQTLISSFDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKFNVSLIQRTTRHFKVTDLGQE
FYEECCKVIAQVECAENVLLKQKSEPQGLVKVSCPPLMMHFQIRKILNQFLKTYPKVEISLELTSRRVDILHDDIDLAIR
TNFEPNEDSNLIVRDVIKTDHCLVASPELLQGRTIKHYSELQDFPSISLGTQKQNYIWHLCNIRNGESVDVPYQPRIKSN
DLAGVYYAVMDGLGIADLPFLTVESEIRKGTLVHILPDWKSNIGMLQLVYVSRKGQRLVVEKLIETLIDELRRLPESHEG
YLPT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081978, Length=290, Percent_Identity=28.6206896551724, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1786401, Length=306, Percent_Identity=25.1633986928105, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789440, Length=318, Percent_Identity=27.6729559748428, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI145693193, Length=276, Percent_Identity=28.2608695652174, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1789639, Length=285, Percent_Identity=24.9122807017544, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787589, Length=279, Percent_Identity=23.6559139784946, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=21.7241379310345, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789173, Length=253, Percent_Identity=25.6916996047431, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI157672245, Length=144, Percent_Identity=23.6111111111111, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 37387; Mature: 37387

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKHSNLEFKWVEQTLISSFDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKF
CCCCCCCCHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCC
NVSLIQRTTRHFKVTDLGQEFYEECCKVIAQVECAENVLLKQKSEPQGLVKVSCPPLMMH
CHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHH
FQIRKILNQFLKTYPKVEISLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTD
HHHHHHHHHHHHHCCCEEEEEEEECCEEEEEECCEEEEEECCCCCCCCCCEEHHHHHCCC
HCLVASPELLQGRTIKHYSELQDFPSISLGTQKQNYIWHLCNIRNGESVDVPYQPRIKSN
CEEEECCHHHCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEECCCCCCCCCCC
DLAGVYYAVMDGLGIADLPFLTVESEIRKGTLVHILPDWKSNIGMLQLVYVSRKGQRLVV
CCHHHHHHHHCCCCCCCCCEEEEHHHHCCCCEEEEECCCCCCCCEEEEEEECCCCCCHHH
EKLIETLIDELRRLPESHEGYLPT
HHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MLKHSNLEFKWVEQTLISSFDDFYYFYLVVKHGGFSAASEAENISKSKLSRRIIDLENKF
CCCCCCCCHHHHHHHHHHHHHHHEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCC
NVSLIQRTTRHFKVTDLGQEFYEECCKVIAQVECAENVLLKQKSEPQGLVKVSCPPLMMH
CHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHH
FQIRKILNQFLKTYPKVEISLELTSRRVDILHDDIDLAIRTNFEPNEDSNLIVRDVIKTD
HHHHHHHHHHHHHCCCEEEEEEEECCEEEEEECCEEEEEECCCCCCCCCCEEHHHHHCCC
HCLVASPELLQGRTIKHYSELQDFPSISLGTQKQNYIWHLCNIRNGESVDVPYQPRIKSN
CEEEECCHHHCCCCHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCEECCCCCCCCCCC
DLAGVYYAVMDGLGIADLPFLTVESEIRKGTLVHILPDWKSNIGMLQLVYVSRKGQRLVV
CCHHHHHHHHCCCCCCCCCEEEEHHHHCCCCEEEEECCCCCCCCEEEEEEECCCCCCHHH
EKLIETLIDELRRLPESHEGYLPT
HHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]