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The map label for this gene is ydhM [C]

Identifier: 213159005

GI number: 213159005

Start: 3822595

End: 3823146

Strand: Reverse

Name: ydhM [C]

Synonym: AB57_3712

Alternate gene names: 213159005

Gene position: 3823146-3822595 (Counterclockwise)

Preceding gene: 213159008

Following gene: 213159003

Centisome position: 94.39

GC content: 37.14

Gene sequence:

>552_bases
ATGAAAAATTTAGACGCTTCACGTAGGGCATTACACGTGATTGATACGGCAACAGATTTATTTAAACAATATGGCTTTAA
TAAGGTCGGGGTGGACCAAATTATTGCTGAATCTCAAATAAATAAAGGCACCTTTTATAGCTACTTTCACTCCAAAGAAA
GATTTATTGAACGGTGTCTGGTCGCGCAAAAAGAGCAGTTACAAGAAAAAGTGAGTGTGGTGAGTGAGCTTTACCAAAAT
GCAGATTTGTCTGATCAACTCAGGCAAATTTATCTTTTACATGCTGACTTAAAAAGTGCGTATTACCTGTTGTTTAAGGC
GATTTTTGAAATTAAAAAGCTTTATCCAAATGCCTACCAAACCGCACTCAGATATAGGCGGTGGCTTAAAAATGAAATTT
TATGCTTGCTCATGGAAACCAAAAAAACAGTTTCCTATTCAGAAGCGGAGATATTTGTATTTATGATGGATGGCGCAATT
CTGGGCCTGTTAAGTTCAGATGAAGAAAGGGAAAGGGATGCTTTGCTTGAGTATTTTTTAGAGCGGGTTTGA

Upstream 100 bases:

>100_bases
TTTTGTGCTGCTTTTGCACGCCTGTATTTAGCGCTCAATTTAAGAGCGACGGCATTTCTATCTCTTTTTTTACAACAAAA
AATTATTTTAAGCGGTATAC

Downstream 100 bases:

>100_bases
TAGGGGAAAGGCCTAGATTTAGGCCTTTTTAAAACTTAAAAATTTGTATGGGGCTTAATCGCCTAAGGTAATTCTTAATC
TGTTTAATGCCCCCATTAAA

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: Transcriptional Regulator; Bacterial Regulatory Protein; Transcriptional Regulator TetR Family Protein; Bacterial Regulatory Protein TetR Family Protein; Transcriptional Regulator TetR Family; TetR Family Regulatory Protein; LOW QUALITY PROTEIN TetR Family Transcriptional Regulator; LOW QUALITY PROTEIN Bacterial Regulatory Protein; LOW QUALITY PROTEIN Transcriptional Regulator; TerR Family Transcriptional Regulator

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MKNLDASRRALHVIDTATDLFKQYGFNKVGVDQIIAESQINKGTFYSYFHSKERFIERCLVAQKEQLQEKVSVVSELYQN
ADLSDQLRQIYLLHADLKSAYYLLFKAIFEIKKLYPNAYQTALRYRRWLKNEILCLLMETKKTVSYSEAEIFVFMMDGAI
LGLLSSDEERERDALLEYFLERV

Sequences:

>Translated_183_residues
MKNLDASRRALHVIDTATDLFKQYGFNKVGVDQIIAESQINKGTFYSYFHSKERFIERCLVAQKEQLQEKVSVVSELYQN
ADLSDQLRQIYLLHADLKSAYYLLFKAIFEIKKLYPNAYQTALRYRRWLKNEILCLLMETKKTVSYSEAEIFVFMMDGAI
LGLLSSDEERERDALLEYFLERV
>Mature_183_residues
MKNLDASRRALHVIDTATDLFKQYGFNKVGVDQIIAESQINKGTFYSYFHSKERFIERCLVAQKEQLQEKVSVVSELYQN
ADLSDQLRQIYLLHADLKSAYYLLFKAIFEIKKLYPNAYQTALRYRRWLKNEILCLLMETKKTVSYSEAEIFVFMMDGAI
LGLLSSDEERERDALLEYFLERV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21566; Mature: 21566

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLDASRRALHVIDTATDLFKQYGFNKVGVDQIIAESQINKGTFYSYFHSKERFIERCL
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VAQKEQLQEKVSVVSELYQNADLSDQLRQIYLLHADLKSAYYLLFKAIFEIKKLYPNAYQ
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
TALRYRRWLKNEILCLLMETKKTVSYSEAEIFVFMMDGAILGLLSSDEERERDALLEYFL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEECCHHHHHHCCCHHHHHHHHHHHHH
ERV
HHC
>Mature Secondary Structure
MKNLDASRRALHVIDTATDLFKQYGFNKVGVDQIIAESQINKGTFYSYFHSKERFIERCL
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
VAQKEQLQEKVSVVSELYQNADLSDQLRQIYLLHADLKSAYYLLFKAIFEIKKLYPNAYQ
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
TALRYRRWLKNEILCLLMETKKTVSYSEAEIFVFMMDGAILGLLSSDEERERDALLEYFL
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHEEEEEECCHHHHHHCCCHHHHHHHHHHHHH
ERV
HHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA