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The map label for this gene is ydeP [H]

Identifier: 213159003

GI number: 213159003

Start: 3821698

End: 3822012

Strand: Reverse

Name: ydeP [H]

Synonym: AB57_3710

Alternate gene names: 213159003

Gene position: 3822012-3821698 (Counterclockwise)

Preceding gene: 213159005

Following gene: 213158999

Centisome position: 94.36

GC content: 34.92

Gene sequence:

>315_bases
ATGAAAGATAATATTTCTGGCTGTACAGTCGAAGAAGCCATGACTGTTTTAGGTGGTCGTTGGCGCATGCTCATTATTTC
TTTTTTATTAGAAAGAACGATGCGTTTTAATGAGTTGCGCAGAGCAATCCCTAATATTTCACAAAGAATGCTGACTTTAG
AACTACGTTTTTTAGAAGAAGAAGGATTTATTTTAAGAGAAGTCTATGCAGAAGTGCCTGTTAAGGTTGAATATTCTTTA
ACTGAGGAAGGCCGGAAATTAGAAAAATTAGTAGATGTATTAAAAGAAATTGGTGGATGGCTTAAATCGAGATAG

Upstream 100 bases:

>100_bases
GTGATTGTTCAGAGAAAATCATTATTTATAAATAGGTATAAGTTGTAAATTAGGCATTTTTTTGTTATGTAGGTATATTT
ATTATACTTAGCAATTAACT

Downstream 100 bases:

>100_bases
TTTTGTTTTTCGTAAGTGAATGAATGTTTTAAGTTGGGGGAAGATCCGACGGGAGTTGGGCCTACTTTTAGTAAAAGATT
CAACTGAGAATTGAAACTAA

Product: transcriptional regulator, HxlR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 104

Protein sequence:

>104_residues
MKDNISGCTVEEAMTVLGGRWRMLIISFLLERTMRFNELRRAIPNISQRMLTLELRFLEEEGFILREVYAEVPVKVEYSL
TEEGRKLEKLVDVLKEIGGWLKSR

Sequences:

>Translated_104_residues
MKDNISGCTVEEAMTVLGGRWRMLIISFLLERTMRFNELRRAIPNISQRMLTLELRFLEEEGFILREVYAEVPVKVEYSL
TEEGRKLEKLVDVLKEIGGWLKSR
>Mature_104_residues
MKDNISGCTVEEAMTVLGGRWRMLIISFLLERTMRFNELRRAIPNISQRMLTLELRFLEEEGFILREVYAEVPVKVEYSL
TEEGRKLEKLVDVLKEIGGWLKSR

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=89, Percent_Identity=40.4494382022472, Blast_Score=69, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12220; Mature: 12220

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDNISGCTVEEAMTVLGGRWRMLIISFLLERTMRFNELRRAIPNISQRMLTLELRFLEE
CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EGFILREVYAEVPVKVEYSLTEEGRKLEKLVDVLKEIGGWLKSR
CCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKDNISGCTVEEAMTVLGGRWRMLIISFLLERTMRFNELRRAIPNISQRMLTLELRFLEE
CCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
EGFILREVYAEVPVKVEYSLTEEGRKLEKLVDVLKEIGGWLKSR
CCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]