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The map label for this gene is rimM [H]

Identifier: 213158916

GI number: 213158916

Start: 3723104

End: 3723652

Strand: Reverse

Name: rimM [H]

Synonym: AB57_3617

Alternate gene names: 213158916

Gene position: 3723652-3723104 (Counterclockwise)

Preceding gene: 213158917

Following gene: 213158915

Centisome position: 91.93

GC content: 44.44

Gene sequence:

>549_bases
ATGACACCAACACAGAATGTTCCCGAAGATCGTATTCAGATTGGACAGTTACGTTCAGCTTATGGATTAAATGGGTGGCT
CTGGGTGTATTCCAATACAGAACCCATGAGCAATATGTTTGACTACTTGCCTTGGTACATCGAGACCAAGGCCGGTTGGC
AAATCGTTGATGTAAAACGTTGGAAACCACATGGCAAAGGTCTAGTTGTTGCTCTAAAAGGTGTGAGTGATCGCACAGGA
GCAGAAAGCTTGGTTGGCGCTAATATCTGGATTGCTAAATCTCAACTGCCGAAAGCAGATGTAGATGAGTACTACTGGTC
AGATTTGAAAGGCTTAACAGTGTTAGGTCTTGATGACGACGAACAGGAAGTGAACTTGGGGCAAATTCATGAGTTGTTTG
AAACTGGAGCCAATGATGTGATGGTTGTACGCGCTACACCAGACAGCATTGATTCAGAAGAACGCATGATCCCGTGGCAT
AAAGATGTGGTGCAACGTGTTGATCTTGAAGCTGGTCGCATTTACGTCAATTGGGGCGTAGATTATTAA

Upstream 100 bases:

>100_bases
GCTCACTGGGTTTCTCAAGGTGCTCAACCTTCTGAACGTGTTGCTTCTTTGGCTGCTCAAGCTAAAAAAGCTACTGCATA
ATTATTGTAGTAGGTAGCCC

Downstream 100 bases:

>100_bases
TCCTTTTTATAGGATTAACGCAGCAGGAAAATAGAGGAGTCTGCGGTGTTTTTTGCAGTCATTACGCTTTTTCCTGAAAT
GTTTGACGCGATTACAGCCT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MTPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQIVDVKRWKPHGKGLVVALKGVSDRTG
AESLVGANIWIAKSQLPKADVDEYYWSDLKGLTVLGLDDDEQEVNLGQIHELFETGANDVMVVRATPDSIDSEERMIPWH
KDVVQRVDLEAGRIYVNWGVDY

Sequences:

>Translated_182_residues
MTPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQIVDVKRWKPHGKGLVVALKGVSDRTG
AESLVGANIWIAKSQLPKADVDEYYWSDLKGLTVLGLDDDEQEVNLGQIHELFETGANDVMVVRATPDSIDSEERMIPWH
KDVVQRVDLEAGRIYVNWGVDY
>Mature_181_residues
TPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQIVDVKRWKPHGKGLVVALKGVSDRTGA
ESLVGANIWIAKSQLPKADVDEYYWSDLKGLTVLGLDDDEQEVNLGQIHELFETGANDVMVVRATPDSIDSEERMIPWHK
DVVQRVDLEAGRIYVNWGVDY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=177, Percent_Identity=38.4180790960452, Blast_Score=136, Evalue=9e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 20742; Mature: 20610

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQIVDVKR
CCCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCEEEECCCCEEEEEEEE
WKPHGKGLVVALKGVSDRTGAESLVGANIWIAKSQLPKADVDEYYWSDLKGLTVLGLDDD
CCCCCCEEEEEEECCCCCCCCHHHCCCEEEEECCCCCCCCCHHHHHHCCCCCEEEECCCC
EQEVNLGQIHELFETGANDVMVVRATPDSIDSEERMIPWHKDVVQRVDLEAGRIYVNWGV
CCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECC
DY
CC
>Mature Secondary Structure 
TPTQNVPEDRIQIGQLRSAYGLNGWLWVYSNTEPMSNMFDYLPWYIETKAGWQIVDVKR
CCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCEEEECCCCEEEEEEEE
WKPHGKGLVVALKGVSDRTGAESLVGANIWIAKSQLPKADVDEYYWSDLKGLTVLGLDDD
CCCCCCEEEEEEECCCCCCCCHHHCCCEEEEECCCCCCCCCHHHHHHCCCCCEEEECCCC
EQEVNLGQIHELFETGANDVMVVRATPDSIDSEERMIPWHKDVVQRVDLEAGRIYVNWGV
CCCCCHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECC
DY
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA