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The map label for this gene is comF [H]

Identifier: 213158850

GI number: 213158850

Start: 3652342

End: 3652977

Strand: Direct

Name: comF [H]

Synonym: AB57_3545

Alternate gene names: 213158850

Gene position: 3652342-3652977 (Clockwise)

Preceding gene: 213158849

Following gene: 213158853

Centisome position: 90.17

GC content: 37.89

Gene sequence:

>636_bases
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGAGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAATCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAACAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Upstream 100 bases:

>100_bases
AGTCAAGCACACTACGTTGCACAACAAGTTCTAAAAGATTACCCTGAGCAAGCTGATGCCTTATTGAAGCGCTGGCTTCC
CGAAGCTCCTCGATATGCAT

Downstream 100 bases:

>100_bases
AATTATAGAGTTATAGATAAGTTCTGCTCACACCACGGAATTACAATTTCTTTGGTTAATGGTGCAAGTTTTGTCTCGGA
ATCATTAAATTTCACCCACT

Product: competence protein F

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Sequences:

>Translated_211_residues
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY
>Mature_211_residues
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 24566; Mature: 24566

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS00103 PUR_PYR_PR_TRANSFER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAY
CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHCCCCEEEEEEHHHC
PINRIIQQFKYEQKLHYQTLLAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCHHHHHHCCCCHHHHHHHH
LSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVALTQEKRRYRRVLIIDDVITTG
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SSIHALSQALKQLGCTSIHASCLAAASSTSY
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFKFLNPQYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAY
CCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHCCCCEEEEEEHHHC
PINRIIQQFKYEQKLHYQTLLAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEECCCCCHHHHHHCCCCHHHHHHHH
LSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVALTQEKRRYRRVLIIDDVITTG
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SSIHALSQALKQLGCTSIHASCLAAASSTSY
HHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]