Click here to switch to the map view.

The map label for this gene is sun [H]

Identifier: 213158779

GI number: 213158779

Start: 4039394

End: 4040698

Strand: Direct

Name: sun [H]

Synonym: AB57_3913

Alternate gene names: 213158779

Gene position: 4039394-4040698 (Clockwise)

Preceding gene: 213158778

Following gene: 213158782

Centisome position: 99.73

GC content: 42.84

Gene sequence:

>1305_bases
ATGAGTCAGGTTACTTCAAATTCATCACGTTTTAACCTGCGCGCTCAAGTCGTCCAGACCTTGCTAAAAGTTCAGCAAGG
TCAATCGTTGGCTAGTATTTTAAATACACAGCTGAATCAAGTAGCAGAGCGTGATCGTGCACTATTTCATGAACTTGTTT
TAGGTACATTGCGCCAATGGTTCGCACTTAAGTCAATTAGCCTGCCTTTACTCAGCAAACCTTTAAACAATGAGACAGTA
GAAACCTGCCTATATGTTGGCCTTTATCAAGTTTTATGCACGCGTATTGCAGCGCACGCTGCCATCTCGGAAACAGTCGA
TGCGACTAAACAACTTGGTTTCCCTGCACTCAGTGGTATTGTTAATGCAATTTTGCGCCGAGCAACTCGCGAAACTGAAG
ACTTTGAACAAGGTTTACATCAAGCGCATGGCTTACCAAGTTGGCTTTTTAAACGCTTAAAAAAGGATTGGGGAGAACAA
ACAGAAGCTCTCTGCCAATCGTTAAAGCAAGTTGCGCCTTTAACTTTACGGGTGAACCAGCGTCATATTGGTCGAGATGC
TTATTTAGCAAAACTGCAAAGTTTAGACATTCAGGCACGTGCGTGTTTGTTTTCCGAAGCTGCTATTGTCCTTGAGCAAT
CTGTACAAATCACTCAGTTACCGGGTTTTGAACAAGGCTGGTTCTCTGTACAAGATGAACATGCACAGCTATGTGCCACC
TTGTTGCCTGATTTAAACAATAAAACGGTTATTGATGCTTGTGCTGCCCCAGGGGGTAAAACGGCTCATTTGCTTGAAAA
GTTTAAACCAGCACAGCTCATCGCCATTGATCAGGACCCAAGCCGTTTAGTCCGCGTGACTGAAAACTTAAATCGCTTAG
CACTCGATCAAAGCCATACGGAAATTTTGGCAGCCGATGCAACCAAGTGGAATCCTGTTCAACCTGTAGATTGTATCGTA
CTTGATGCTCCTTGTTCTGCGACAGGTGTGATTCGACGTCATCCTGACATACGCCTATTGCGCCAATCTAGTGACATAGC
CCAAACCATTGAGCTACAAAAGCAGATCTTAGAGCACATGTGGCAGCAACTCAAAGTTGGCGGTACATTGCTTTATATCA
CCTGCTCAATTTTAAAATCTGAAAACGAACAGCAGATGATTAACTTCTTCACAGAACATACTGATGCAAAAGAAGTGAAA
ATCGAGGCAGATTGGGGAATTGAACAAACTTATGGCAGACAACTGTTGCCAGAAGCACAATCTGGTGATGGATTTTATTA
TTGTAAAATTCAAAAGATTGCATAA

Upstream 100 bases:

>100_bases
CATTTATTTGTTTAACGAGTGTGCAGTGGCCGGGTGGTAAAGCATTAAATGCTCAACAAATTGCACAAACTCAAAAACTT
CACGTAGGACAGATTCTGCC

Downstream 100 bases:

>100_bases
AAAAAGCAGGCGTTATGCCTGCTTTTTGACTAGATCAGAATATCAAAGCGTATGCTGATCTTTTACTTCTTCTAAAACTT
CATCTAACTCTTCAGGATGC

Product: ribosomal RNA small subunit methyltransferase B

Products: NA

Alternate protein names: 16S rRNA m5C967 methyltransferase; rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MSQVTSNSSRFNLRAQVVQTLLKVQQGQSLASILNTQLNQVAERDRALFHELVLGTLRQWFALKSISLPLLSKPLNNETV
ETCLYVGLYQVLCTRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFEQGLHQAHGLPSWLFKRLKKDWGEQ
TEALCQSLKQVAPLTLRVNQRHIGRDAYLAKLQSLDIQARACLFSEAAIVLEQSVQITQLPGFEQGWFSVQDEHAQLCAT
LLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQSHTEILAADATKWNPVQPVDCIV
LDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCSILKSENEQQMINFFTEHTDAKEVK
IEADWGIEQTYGRQLLPEAQSGDGFYYCKIQKIA

Sequences:

>Translated_434_residues
MSQVTSNSSRFNLRAQVVQTLLKVQQGQSLASILNTQLNQVAERDRALFHELVLGTLRQWFALKSISLPLLSKPLNNETV
ETCLYVGLYQVLCTRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFEQGLHQAHGLPSWLFKRLKKDWGEQ
TEALCQSLKQVAPLTLRVNQRHIGRDAYLAKLQSLDIQARACLFSEAAIVLEQSVQITQLPGFEQGWFSVQDEHAQLCAT
LLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQSHTEILAADATKWNPVQPVDCIV
LDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCSILKSENEQQMINFFTEHTDAKEVK
IEADWGIEQTYGRQLLPEAQSGDGFYYCKIQKIA
>Mature_433_residues
SQVTSNSSRFNLRAQVVQTLLKVQQGQSLASILNTQLNQVAERDRALFHELVLGTLRQWFALKSISLPLLSKPLNNETVE
TCLYVGLYQVLCTRIAAHAAISETVDATKQLGFPALSGIVNAILRRATRETEDFEQGLHQAHGLPSWLFKRLKKDWGEQT
EALCQSLKQVAPLTLRVNQRHIGRDAYLAKLQSLDIQARACLFSEAAIVLEQSVQITQLPGFEQGWFSVQDEHAQLCATL
LPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQSHTEILAADATKWNPVQPVDCIVL
DAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHMWQQLKVGGTLLYITCSILKSENEQQMINFFTEHTDAKEVKI
EADWGIEQTYGRQLLPEAQSGDGFYYCKIQKIA

Specific function: Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA [H]

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=283, Percent_Identity=28.2685512367491, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI76150623, Length=283, Percent_Identity=28.2685512367491, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI32698918, Length=173, Percent_Identity=27.7456647398844, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI2367212, Length=427, Percent_Identity=41.4519906323185, Blast_Score=317, Evalue=1e-87,
Organism=Escherichia coli, GI87081985, Length=219, Percent_Identity=27.8538812785388, Blast_Score=76, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17536757, Length=284, Percent_Identity=26.7605633802817, Blast_Score=102, Evalue=3e-22,
Organism=Saccharomyces cerevisiae, GI6324268, Length=244, Percent_Identity=29.0983606557377, Blast_Score=88, Evalue=2e-18,
Organism=Drosophila melanogaster, GI22024126, Length=283, Percent_Identity=26.5017667844523, Blast_Score=99, Evalue=6e-21,
Organism=Drosophila melanogaster, GI21356513, Length=260, Percent_Identity=25, Blast_Score=72, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24668781, Length=260, Percent_Identity=25, Blast_Score=71, Evalue=1e-12,
Organism=Drosophila melanogaster, GI21355201, Length=176, Percent_Identity=30.1136363636364, Blast_Score=70, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: =2.1.1.176 [H]

Molecular weight: Translated: 48578; Mature: 48447

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVTSNSSRFNLRAQVVQTLLKVQQGQSLASILNTQLNQVAERDRALFHELVLGTLRQW
CCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FALKSISLPLLSKPLNNETVETCLYVGLYQVLCTRIAAHAAISETVDATKQLGFPALSGI
HHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
VNAILRRATRETEDFEQGLHQAHGLPSWLFKRLKKDWGEQTEALCQSLKQVAPLTLRVNQ
HHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEEECH
RHIGRDAYLAKLQSLDIQARACLFSEAAIVLEQSVQITQLPGFEQGWFSVQDEHAQLCAT
HHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHH
LLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQSHT
HCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCH
EILAADATKWNPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHM
HEEEECCCCCCCCCCCEEEEEECCCCCCCHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHH
WQQLKVGGTLLYITCSILKSENEQQMINFFTEHTDAKEVKIEADWGIEQTYGRQLLPEAQ
HHHHHCCCEEEEEEHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHCHHHCCCCC
SGDGFYYCKIQKIA
CCCCEEEEEEEECC
>Mature Secondary Structure 
SQVTSNSSRFNLRAQVVQTLLKVQQGQSLASILNTQLNQVAERDRALFHELVLGTLRQW
CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FALKSISLPLLSKPLNNETVETCLYVGLYQVLCTRIAAHAAISETVDATKQLGFPALSGI
HHHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
VNAILRRATRETEDFEQGLHQAHGLPSWLFKRLKKDWGEQTEALCQSLKQVAPLTLRVNQ
HHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEEECH
RHIGRDAYLAKLQSLDIQARACLFSEAAIVLEQSVQITQLPGFEQGWFSVQDEHAQLCAT
HHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHH
LLPDLNNKTVIDACAAPGGKTAHLLEKFKPAQLIAIDQDPSRLVRVTENLNRLALDQSHT
HCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCH
EILAADATKWNPVQPVDCIVLDAPCSATGVIRRHPDIRLLRQSSDIAQTIELQKQILEHM
HEEEECCCCCCCCCCCEEEEEECCCCCCCHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHH
WQQLKVGGTLLYITCSILKSENEQQMINFFTEHTDAKEVKIEADWGIEQTYGRQLLPEAQ
HHHHHCCCEEEEEEHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHCHHHCCCCC
SGDGFYYCKIQKIA
CCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]