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The map label for this gene is rarA [H]

Identifier: 213158747

GI number: 213158747

Start: 4005973

End: 4007238

Strand: Reverse

Name: rarA [H]

Synonym: AB57_3881

Alternate gene names: 213158747

Gene position: 4007238-4005973 (Counterclockwise)

Preceding gene: 213158748

Following gene: 213158741

Centisome position: 98.93

GC content: 41.94

Gene sequence:

>1266_bases
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGGCATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATTCAGATG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTAATAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCTGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCTGAGCACTTTGTACTGCAAGATTATTTGCCGCCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Upstream 100 bases:

>100_bases
TGAGTTAGCCTATAAATAAAGGATGTGTCTCATAGATTCAAATTGTAGATTTCTGTGAGACACAATAGACTATAGTGAAA
AGACGATAAAGCTATTTGAG

Downstream 100 bases:

>100_bases
TTTTATTGTTTCCTGCTATTGTTCCAATTCTTCAGTCACCTGACCATAAATCAGCAGGGTAAACACGCCTGTACCACCAA
TAATATTACCAATGGTGGTT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 420

Protein sequence:

>421_residues
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQM
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Sequences:

>Translated_421_residues
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQM
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ
>Mature_420_residues
SDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGVK
ELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQML
LNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYDL
VSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTAV
YLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYESA
RNKREVEGERLQQRRWQQEQ

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=441, Percent_Identity=41.2698412698413, Blast_Score=307, Evalue=1e-83,
Organism=Homo sapiens, GI18426904, Length=441, Percent_Identity=37.18820861678, Blast_Score=258, Evalue=5e-69,
Organism=Homo sapiens, GI31563534, Length=280, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI6677723, Length=234, Percent_Identity=26.0683760683761, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI28882049, Length=267, Percent_Identity=29.2134831460674, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI194306571, Length=231, Percent_Identity=25.974025974026, Blast_Score=65, Evalue=1e-10,
Organism=Homo sapiens, GI194306567, Length=231, Percent_Identity=25.974025974026, Blast_Score=65, Evalue=1e-10,
Organism=Escherichia coli, GI1787119, Length=430, Percent_Identity=43.7209302325581, Blast_Score=347, Evalue=1e-96,
Organism=Caenorhabditis elegans, GI71986063, Length=238, Percent_Identity=25.2100840336134, Blast_Score=72, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6324111, Length=425, Percent_Identity=42.1176470588235, Blast_Score=298, Evalue=9e-82,
Organism=Saccharomyces cerevisiae, GI6324039, Length=275, Percent_Identity=26.1818181818182, Blast_Score=91, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6322528, Length=221, Percent_Identity=24.4343891402715, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI17647857, Length=282, Percent_Identity=27.6595744680851, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI19921076, Length=240, Percent_Identity=26.25, Blast_Score=66, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 46976; Mature: 46845

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIAL
CCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCHHHHHH
LLAQAIDRPFVSLSALNTGVKELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEK
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC
GKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQMLLNNALQNDKFLKERYIHIE
CCEEEEEECCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCHHHHHHCCCHH
EYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEEEHHHHHHHHCCCCCHHHH
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGEC
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEHHH
FRSVQAVGMPEARIILGQTAVYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPT
HHHHHHCCCCCCEEEECCCEEEEEECCCCCCEEEEHHHHHHHHHHHCCCCCEEEECCCHH
KLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYESARNKREVEGERLQQRRWQQE
HHHHHCCCCCEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCC
Q
C
>Mature Secondary Structure 
SDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIAL
CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCHHHHHHCCCCCCEEEEECCCCCCHHHHHH
LLAQAIDRPFVSLSALNTGVKELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEK
HHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCC
GKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQMLLNNALQNDKFLKERYIHIE
CCEEEEEECCCCCCCCHHHHHHHHHHEEEECCCCHHHHHHHHHHHHCCCHHHHHHCCCHH
EYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
HHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHCCCEEEEEEHHHHHHHHCCCCCHHHH
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGEC
HHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEHHH
FRSVQAVGMPEARIILGQTAVYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPT
HHHHHHCCCCCCEEEECCCEEEEEECCCCCCEEEEHHHHHHHHHHHCCCCCEEEECCCHH
KLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYESARNKREVEGERLQQRRWQQE
HHHHHCCCCCEEECCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCC
Q
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]