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The map label for this gene is yddE [C]

Identifier: 213158694

GI number: 213158694

Start: 2739496

End: 2740365

Strand: Reverse

Name: yddE [C]

Synonym: AB57_2650

Alternate gene names: 213158694

Gene position: 2740365-2739496 (Counterclockwise)

Preceding gene: 213158699

Following gene: 213158692

Centisome position: 67.65

GC content: 41.95

Gene sequence:

>870_bases
ATGTCTGTTGTTGCATTTAAACAAGTTGATGTTTTTACTTCACAAGCATTTAAAGGAAACCCTGTTGCGGTCATTATGGA
CGCCAGTACCTTAACGTCTGAGCAGATGCAAGCCATTGCGAACTGGACCAATCTTTCTGAAACCACATTTGTATTGCCAG
CCACTGATTCACAAGCTGACTATCAGGTTCGAATCTTTACTCCACAAAGTGAGTTGCCGTTTGCAGGACACCCTACCATT
GGTACAGCCTATGCTTTGCTTGAGGCAGGCCTAATTAAAGCGAAAGAAGGTCAGCTGGTACAGCAGTGCGCTGCTGGTTT
AGTAACGCTGACTGTGAATGACTCAAATCATATTTCCTTTGAGTTACCTAAACCTAAAATTACACCATTAGATGCACTAC
AAACCGAGAAATTGGCCGAGTTTTTAAAATGTAAAATCAATACTCAATGGAATGCCGCATTGGTAGATGTCGGAGCCCGC
TGGGTTGTATTGCAAGCTGTTAATGCTGAGGCTGTTTTGGCAAGTCAGCCTGATCTAAACGCTTTAAAGCAATTTAGTTT
AGATATGAAAGTAACAGGCTCTACAATTTATGGATTTTATGAAGAAAGTAATGAGCAAAAGCGCATAGAAGTTCGTTCAT
TTGCTCCGGCATATGGAGTTTACGAAGATCCTGTTTGTGGTAGCGGTAATGGTAGCGTGGCATCTTTCATTCGTTACCAT
GGTATTTTGCCTGCGCAAAATGATGTGGTGCTTTCTTCTCAGGGGCAAGCTTTAGGGCGTGAAGGACAGCTTCAACTTGA
ATTACATCAAGATAAAATTTTAGTGGGTGGAGCTGCTGTTACTTGTATCGACGGTACGATTAAGTTGTAA

Upstream 100 bases:

>100_bases
ATTAACTGATACTGTGACCATTAAAAATAAAACAGTAAGATCAAAAAATGGTGAGGATTTAAAGCCATATTTTAAATTAC
AAAATCAGTAGGAGTGGTCT

Downstream 100 bases:

>100_bases
AAACAGAAATAAAAAACCGAGGACTTTGCCTCGGTTTTTTAATTAGAAAAAATCTTATTTTTCTACGAACGCACGTTCAA
TGACATAGTCGCCCATTTCA

Product: phenazine biosynthesis protein PhzF family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MSVVAFKQVDVFTSQAFKGNPVAVIMDASTLTSEQMQAIANWTNLSETTFVLPATDSQADYQVRIFTPQSELPFAGHPTI
GTAYALLEAGLIKAKEGQLVQQCAAGLVTLTVNDSNHISFELPKPKITPLDALQTEKLAEFLKCKINTQWNAALVDVGAR
WVVLQAVNAEAVLASQPDLNALKQFSLDMKVTGSTIYGFYEESNEQKRIEVRSFAPAYGVYEDPVCGSGNGSVASFIRYH
GILPAQNDVVLSSQGQALGREGQLQLELHQDKILVGGAAVTCIDGTIKL

Sequences:

>Translated_289_residues
MSVVAFKQVDVFTSQAFKGNPVAVIMDASTLTSEQMQAIANWTNLSETTFVLPATDSQADYQVRIFTPQSELPFAGHPTI
GTAYALLEAGLIKAKEGQLVQQCAAGLVTLTVNDSNHISFELPKPKITPLDALQTEKLAEFLKCKINTQWNAALVDVGAR
WVVLQAVNAEAVLASQPDLNALKQFSLDMKVTGSTIYGFYEESNEQKRIEVRSFAPAYGVYEDPVCGSGNGSVASFIRYH
GILPAQNDVVLSSQGQALGREGQLQLELHQDKILVGGAAVTCIDGTIKL
>Mature_288_residues
SVVAFKQVDVFTSQAFKGNPVAVIMDASTLTSEQMQAIANWTNLSETTFVLPATDSQADYQVRIFTPQSELPFAGHPTIG
TAYALLEAGLIKAKEGQLVQQCAAGLVTLTVNDSNHISFELPKPKITPLDALQTEKLAEFLKCKINTQWNAALVDVGARW
VVLQAVNAEAVLASQPDLNALKQFSLDMKVTGSTIYGFYEESNEQKRIEVRSFAPAYGVYEDPVCGSGNGSVASFIRYHG
ILPAQNDVVLSSQGQALGREGQLQLELHQDKILVGGAAVTCIDGTIKL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=288, Percent_Identity=29.5138888888889, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI74316009, Length=247, Percent_Identity=31.5789473684211, Blast_Score=74, Evalue=1e-13,
Organism=Escherichia coli, GI1787737, Length=289, Percent_Identity=31.8339100346021, Blast_Score=124, Evalue=6e-30,
Organism=Caenorhabditis elegans, GI17542160, Length=315, Percent_Identity=25.7142857142857, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17542154, Length=315, Percent_Identity=25.7142857142857, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI17542158, Length=313, Percent_Identity=25.8785942492013, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17542152, Length=313, Percent_Identity=25.8785942492013, Blast_Score=87, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6321818, Length=298, Percent_Identity=38.255033557047, Blast_Score=193, Evalue=3e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 31166; Mature: 31035

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVVAFKQVDVFTSQAFKGNPVAVIMDASTLTSEQMQAIANWTNLSETTFVLPATDSQAD
CCEEEEEEEHHHHHCCCCCCCEEEEEECCHHCHHHHHHHHHHCCCCCEEEEEECCCCCCC
YQVRIFTPQSELPFAGHPTIGTAYALLEAGLIKAKEGQLVQQCAAGLVTLTVNDSNHISF
EEEEEECCCCCCCCCCCCCHHHHHHHHHHCCEECCCCHHHHHHHCCEEEEEECCCCEEEE
ELPKPKITPLDALQTEKLAEFLKCKINTQWNAALVDVGARWVVLQAVNAEAVLASQPDLN
ECCCCCCCCCHHHHHHHHHHHHEEECCCCCCEEEEECCCEEEEEEECCCCEEEECCCCHH
ALKQFSLDMKVTGSTIYGFYEESNEQKRIEVRSFAPAYGVYEDPVCGSGNGSVASFIRYH
HHHHHCCEEEEECCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
GILPAQNDVVLSSQGQALGREGQLQLELHQDKILVGGAAVTCIDGTIKL
CCCCCCCCEEEECCCCCCCCCCEEEEEEECCEEEECCEEEEEECCEEEC
>Mature Secondary Structure 
SVVAFKQVDVFTSQAFKGNPVAVIMDASTLTSEQMQAIANWTNLSETTFVLPATDSQAD
CEEEEEEEHHHHHCCCCCCCEEEEEECCHHCHHHHHHHHHHCCCCCEEEEEECCCCCCC
YQVRIFTPQSELPFAGHPTIGTAYALLEAGLIKAKEGQLVQQCAAGLVTLTVNDSNHISF
EEEEEECCCCCCCCCCCCCHHHHHHHHHHCCEECCCCHHHHHHHCCEEEEEECCCCEEEE
ELPKPKITPLDALQTEKLAEFLKCKINTQWNAALVDVGARWVVLQAVNAEAVLASQPDLN
ECCCCCCCCCHHHHHHHHHHHHEEECCCCCCEEEEECCCEEEEEEECCCCEEEECCCCHH
ALKQFSLDMKVTGSTIYGFYEESNEQKRIEVRSFAPAYGVYEDPVCGSGNGSVASFIRYH
HHHHHCCEEEEECCEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHH
GILPAQNDVVLSSQGQALGREGQLQLELHQDKILVGGAAVTCIDGTIKL
CCCCCCCCEEEECCCCCCCCCCEEEEEEECCEEEECCEEEEEECCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11466286 [H]