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The map label for this gene is ygdD [C]

Identifier: 213158667

GI number: 213158667

Start: 2710803

End: 2711168

Strand: Direct

Name: ygdD [C]

Synonym: AB57_2621

Alternate gene names: 213158667

Gene position: 2710803-2711168 (Clockwise)

Preceding gene: 213158666

Following gene: 213158668

Centisome position: 66.92

GC content: 43.44

Gene sequence:

>366_bases
ATGTGGATTGCCATTTCAGCCCTTAATCTTGCTTTCGCAGTCATGTTGGGTGCTTTTGGAGCACATGGTCTTAAAGCTCA
CGCGAGCCCCGAACAACTTGCTTGGTGGCAGACTGCAACCGACTACTTTTTTTATCATGCGCTTGGATTGTTAGCGCTTG
GTATTTTAAGCAAGGTTCTTCCTCATTTCCCAATCAAGTTATCTTTCTTGCTTATTCAGATTGGCATTCTGTTCTTTTGT
GGTTCGCTTTATATCATGGCATTGGGTTTACCGCGGATATTAGGTGCGATTACCCCAATTGGCGGAGCTTTGATGATTGC
TGGATGGCTAATCTTGGCTTGGAATGCTTTCAAATACGCAAAATAA

Upstream 100 bases:

>100_bases
AAAATAAAAGGGCGATAAGCCCTTTTGTTTTATCTGGCTATGTTTAGCCAACCTATTCTATGGTAACGTTGCCTTTCATT
ATTCAGTTGCGTTTTTTGTT

Downstream 100 bases:

>100_bases
TCGGAATGTGATCATGCAAATTTATTTAAATGGCGAATTAACGGACACGCCTAGCCAAAACCTGTTGCAACTCATTCAGG
AACTGGCACTTGAAGGAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MWIAISALNLAFAVMLGAFGAHGLKAHASPEQLAWWQTATDYFFYHALGLLALGILSKVLPHFPIKLSFLLIQIGILFFC
GSLYIMALGLPRILGAITPIGGALMIAGWLILAWNAFKYAK

Sequences:

>Translated_121_residues
MWIAISALNLAFAVMLGAFGAHGLKAHASPEQLAWWQTATDYFFYHALGLLALGILSKVLPHFPIKLSFLLIQIGILFFC
GSLYIMALGLPRILGAITPIGGALMIAGWLILAWNAFKYAK
>Mature_121_residues
MWIAISALNLAFAVMLGAFGAHGLKAHASPEQLAWWQTATDYFFYHALGLLALGILSKVLPHFPIKLSFLLIQIGILFFC
GSLYIMALGLPRILGAITPIGGALMIAGWLILAWNAFKYAK

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=108, Percent_Identity=32.4074074074074, Blast_Score=60, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 13175; Mature: 13175

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIAISALNLAFAVMLGAFGAHGLKAHASPEQLAWWQTATDYFFYHALGLLALGILSKVL
CEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PHFPIKLSFLLIQIGILFFCGSLYIMALGLPRILGAITPIGGALMIAGWLILAWNAFKYA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
K
C
>Mature Secondary Structure
MWIAISALNLAFAVMLGAFGAHGLKAHASPEQLAWWQTATDYFFYHALGLLALGILSKVL
CEEEHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PHFPIKLSFLLIQIGILFFCGSLYIMALGLPRILGAITPIGGALMIAGWLILAWNAFKYA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
K
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA