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The map label for this gene is ycdS [C]

Identifier: 213158547

GI number: 213158547

Start: 2593054

End: 2594328

Strand: Reverse

Name: ycdS [C]

Synonym: AB57_2499

Alternate gene names: 213158547

Gene position: 2594328-2593054 (Counterclockwise)

Preceding gene: 213158548

Following gene: 213158546

Centisome position: 64.05

GC content: 35.92

Gene sequence:

>1275_bases
TTGCCAATTCATTTATACGCTGCTCAGGTTGATGTATTGCGTGAGCAAGCTATTCAAAATTATAGAGCAGGACAAACTCA
ACAAGCTGTATCCCAACTAGATCAATTGCTAAATAAATACCCGCATGATCAAAAGCTGCTTGCTGATTATCTGTTTATTA
TGTCAAGTGAAAAAAGGGATCTTACGAATTTTTCACGGTTTTTGGTAAATATTAATTATGTAGACTTTCCAGAATATGCA
AAGTTACCTTTAATTCAAAATTTCCGTGATTTTAAGCATTTTAAAACTGCAATTGACTGGTCAAATAAGTTCAATATTCA
AAAGTCAGTTGATGGGCGTATTTTATTATCGGTTTTGTATGCTGAAGCTCAAGATGTGGCGAATGCTAAAGATCAGTTGT
CGAAGATCGATATTAAAGGTTTAACTGCTGATCAGTTGGTACGGGTTGCATATGCTTATCGTTTAATAAATTTACCAGTA
GATGCTTTAGCTACAGTTGAGCATGCTTATCAACAACAACCAAAATCTTCATCCGTTTTACAAGAATATGTTTACGATCT
AATTGCTATTGGCTCATATAAAAAGGCGCAGCAATTGCTGCAAGCGAGCGAAAAAACTGAACAAACAGTGCAAATGCTGC
AGACTTTACAAGTTAGTGAGTTTTCTCAACATATCAACAATGCAATTGCTCGATATAAATATTTAAATCGCGAAGGTCTA
TCCGATGCCGAAAGCTTTGCTGAATTAGATAAAGTGCTGGAGCAAGGACAAAAAATGCATCAGCAAATGAATCCTTCCGA
TCCTAATTACTTACGGTTTTATTACGATTATTTATATGGATTAGATTTTAGAGGGCGTTCAAAAGCGGTTATAGAGAATT
TTACCCAGTTGAATATTCCACTCGAAAAATTACCGGCATATGTACGTCATGCAATTGCGGATAGTTATTTGGCGGAGCAA
AAACCGAAAAAGGCCGAGTTTGCTTATAAAACGCTTTTAAGTGAAAAGAATTATCCGGATATGACCGTTTATACGGGACT
GTATTATTCTTATATTGAACAAGAAAAATATAAGGAAGCTGAACAACTTCTCGCTGAAGTTGATCGGCTTATTCCGACTT
ATAAATATAGTCAGGCTAAGGGGGTAGATAAAACCAGTCATCCTGATCGTGATGATTATATTGCTTTACAAGGAATGCAT
TTAGCCTACGCTAATCATCTGGATCAAGCTGAAAAGCATTTTACAAAAAAAAGTAGAGCAGGCGCCTGCGAATGA

Upstream 100 bases:

>100_bases
GTGATGTATGTCACATTTTTAACTATACTTTCCCATCTCGATATGGGACTATTCGATTCTCAAAATGCTAAAGAAATGTG
TTTTTTCATTGGTCTATCTC

Downstream 100 bases:

>100_bases
GAGCCTGATTAATAATCTTGCGCGTGTAGAACGTTGGAGAGAAAAACCGCTAGAGGCAAAAAAAACAATTTCCCGGTTAA
ATGGTATAGATCCGATTGCT

Product: hypothetical protein

Products: NA

Alternate protein names: Biofilm PGA Synthesis Protein PgaA

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MPIHLYAAQVDVLREQAIQNYRAGQTQQAVSQLDQLLNKYPHDQKLLADYLFIMSSEKRDLTNFSRFLVNINYVDFPEYA
KLPLIQNFRDFKHFKTAIDWSNKFNIQKSVDGRILLSVLYAEAQDVANAKDQLSKIDIKGLTADQLVRVAYAYRLINLPV
DALATVEHAYQQQPKSSSVLQEYVYDLIAIGSYKKAQQLLQASEKTEQTVQMLQTLQVSEFSQHINNAIARYKYLNREGL
SDAESFAELDKVLEQGQKMHQQMNPSDPNYLRFYYDYLYGLDFRGRSKAVIENFTQLNIPLEKLPAYVRHAIADSYLAEQ
KPKKAEFAYKTLLSEKNYPDMTVYTGLYYSYIEQEKYKEAEQLLAEVDRLIPTYKYSQAKGVDKTSHPDRDDYIALQGMH
LAYANHLDQAEKHFTKKSRAGACE

Sequences:

>Translated_424_residues
MPIHLYAAQVDVLREQAIQNYRAGQTQQAVSQLDQLLNKYPHDQKLLADYLFIMSSEKRDLTNFSRFLVNINYVDFPEYA
KLPLIQNFRDFKHFKTAIDWSNKFNIQKSVDGRILLSVLYAEAQDVANAKDQLSKIDIKGLTADQLVRVAYAYRLINLPV
DALATVEHAYQQQPKSSSVLQEYVYDLIAIGSYKKAQQLLQASEKTEQTVQMLQTLQVSEFSQHINNAIARYKYLNREGL
SDAESFAELDKVLEQGQKMHQQMNPSDPNYLRFYYDYLYGLDFRGRSKAVIENFTQLNIPLEKLPAYVRHAIADSYLAEQ
KPKKAEFAYKTLLSEKNYPDMTVYTGLYYSYIEQEKYKEAEQLLAEVDRLIPTYKYSQAKGVDKTSHPDRDDYIALQGMH
LAYANHLDQAEKHFTKKSRAGACE
>Mature_423_residues
PIHLYAAQVDVLREQAIQNYRAGQTQQAVSQLDQLLNKYPHDQKLLADYLFIMSSEKRDLTNFSRFLVNINYVDFPEYAK
LPLIQNFRDFKHFKTAIDWSNKFNIQKSVDGRILLSVLYAEAQDVANAKDQLSKIDIKGLTADQLVRVAYAYRLINLPVD
ALATVEHAYQQQPKSSSVLQEYVYDLIAIGSYKKAQQLLQASEKTEQTVQMLQTLQVSEFSQHINNAIARYKYLNREGLS
DAESFAELDKVLEQGQKMHQQMNPSDPNYLRFYYDYLYGLDFRGRSKAVIENFTQLNIPLEKLPAYVRHAIADSYLAEQK
PKKAEFAYKTLLSEKNYPDMTVYTGLYYSYIEQEKYKEAEQLLAEVDRLIPTYKYSQAKGVDKTSHPDRDDYIALQGMHL
AYANHLDQAEKHFTKKSRAGACE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49099; Mature: 48968

Theoretical pI: Translated: 6.92; Mature: 6.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCC
>Mature Secondary Structure 
PIHLYAAQVDVLREQAIQNYRAGQTQQAVSQLDQLLNKYPHDQKLLADYLFIMSSEKRD
CEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHH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CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA