Click here to switch to the map view.

The map label for this gene is ycdP [C]

Identifier: 213158543

GI number: 213158543

Start: 2588388

End: 2588852

Strand: Reverse

Name: ycdP [C]

Synonym: AB57_2495

Alternate gene names: 213158543

Gene position: 2588852-2588388 (Counterclockwise)

Preceding gene: 213158544

Following gene: 213158537

Centisome position: 63.91

GC content: 36.56

Gene sequence:

>465_bases
ATGAAAAATGATACAAATATCGACGTAGAAGTTTTAGATATACCTGAATATATTGATCAGCCTGAATATGTGAAAAATAA
AACTGCAAACTATACGTTACAAACAATAGGTTGGTTTTGTTTAATGTGGCTGCTTTTTCCACTCGTTTCATTATTTTTAT
GGATTTTTGAAGGGCACCTCATCTATGACTATGTGTGGGTCGATCATGTTTCAGAAGTGAAAACTTTATTGCACTTACTT
CTGCTAATAGGTCTGAGCGCGCTAATTTTAATTTTATGGGCAAGTTATAACTGGCTTAGATTTCATGGGGATGATCGCCG
CAGCAAGGCCCCCAATAGCTCTGTTGAGTTGCTGGCCTCACAATTTATGGTCAGTACCGAATCATTATCAGAATTACAAA
AGTCTCAGCGCATCATCTTACATTATGATGAGCAGGGGTATTTAACTCGATATGATTTGAAATGA

Upstream 100 bases:

>100_bases
CGTTATTTACCAGTGTTGTTGCAGTACCCAAAACTATATTTAACACCAAAAAACGTGCTCGTTGGGTAAGCCCTGATCGA
GGCTTCCGTGGAGATCACTC

Downstream 100 bases:

>100_bases
GTGAAAAAAGCATGGTCTATCAACCATGCTTTTTTATTTTTTAAGGTGTAGTTCTGATAATGATATCAACGGGTCGTTGA
GTGCCATCCATACTATAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: Biofilm Synthesis Protein

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MKNDTNIDVEVLDIPEYIDQPEYVKNKTANYTLQTIGWFCLMWLLFPLVSLFLWIFEGHLIYDYVWVDHVSEVKTLLHLL
LLIGLSALILILWASYNWLRFHGDDRRSKAPNSSVELLASQFMVSTESLSELQKSQRIILHYDEQGYLTRYDLK

Sequences:

>Translated_154_residues
MKNDTNIDVEVLDIPEYIDQPEYVKNKTANYTLQTIGWFCLMWLLFPLVSLFLWIFEGHLIYDYVWVDHVSEVKTLLHLL
LLIGLSALILILWASYNWLRFHGDDRRSKAPNSSVELLASQFMVSTESLSELQKSQRIILHYDEQGYLTRYDLK
>Mature_154_residues
MKNDTNIDVEVLDIPEYIDQPEYVKNKTANYTLQTIGWFCLMWLLFPLVSLFLWIFEGHLIYDYVWVDHVSEVKTLLHLL
LLIGLSALILILWASYNWLRFHGDDRRSKAPNSSVELLASQFMVSTESLSELQKSQRIILHYDEQGYLTRYDLK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18187; Mature: 18187

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNDTNIDVEVLDIPEYIDQPEYVKNKTANYTLQTIGWFCLMWLLFPLVSLFLWIFEGHL
CCCCCCCCEEEEECHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
IYDYVWVDHVSEVKTLLHLLLLIGLSALILILWASYNWLRFHGDDRRSKAPNSSVELLAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHH
QFMVSTESLSELQKSQRIILHYDEQGYLTRYDLK
HHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCC
>Mature Secondary Structure
MKNDTNIDVEVLDIPEYIDQPEYVKNKTANYTLQTIGWFCLMWLLFPLVSLFLWIFEGHL
CCCCCCCCEEEEECHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
IYDYVWVDHVSEVKTLLHLLLLIGLSALILILWASYNWLRFHGDDRRSKAPNSSVELLAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHH
QFMVSTESLSELQKSQRIILHYDEQGYLTRYDLK
HHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA