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The map label for this gene is ycfQ [C]

Identifier: 213158378

GI number: 213158378

Start: 2409765

End: 2410418

Strand: Direct

Name: ycfQ [C]

Synonym: AB57_2325

Alternate gene names: 213158378

Gene position: 2409765-2410418 (Clockwise)

Preceding gene: 213158377

Following gene: 213158379

Centisome position: 59.49

GC content: 35.63

Gene sequence:

>654_bases
ATGCATGATCCAGTCCTTGAGTCACATCATCTCGTATGTGAGAAACCCCAAACACGCCGCGGTATAGAACGTCGTTTAGC
TCTATTGCTAAGCGCAACCGAGCTGTTTTTGGAAAAAGGATATGATGCTGTCTCTCTTGACGACATCGTTAATCATGCTG
GTGGTTCAAAAACCTCTATTTATAAATACTTTGGTAATAAAGATGGCTTATTTACTGCAATCTGCGATTATCGCCGTGAA
ATGTTTTTTAAAGATATCTGTATTGCATTTCAACCAGAGCAAACTTCTTTAAAAGATTATTTAATCCAAACTCTCATCCG
TTTTTATAAGCACATTATTCAACCTGAACATATTGCCTTTTTACGTTTAGTTATTGAACAAACTCAATGTAATGCAACTT
TGAGCCAATACTTATATGAAAAGTGTGCTCTGGATGTCCAAAATACAATTGCTCAAGCCTTACTCATATCTCATCAATCA
GGTGAAATTACCTGTACATCTCCTGATCATTCCTCTCTTATGTATTTTGGAATTTTACGTGATATTGAATGGCGAATGAT
TATGGGAATGCCTCTCCCACCTAATGAAACAGAAGTCATTGATTATATTAACTATTGTGTTGATATTTTCTTAAAGGGCC
ATCATAAAGTCTAA

Upstream 100 bases:

>100_bases
CTTATTGTTTACCAGATGACCTAAAAACATACCAATGACCATCGTTAAAGATAGATTTGCTATACTAGATAAGCAGTGTT
AGCCGTCGTTATTAAATTTT

Downstream 100 bases:

>100_bases
TTCTTTTGCATTTTGAAATGCTTATAGTATAGTAGACTTCTTTTTTCCCACTTCCACCCAGCCAACAACAGATAATTGTT
GTAATTCAAAACAATTATTA

Product: transcriptional regulator, TetR family

Products: NA

Alternate protein names: Bacterial Regulatory Protein; TetR Family Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; TetR-Family Transcriptional Regulator; Transcriptional Regulator TetR/AcrR Family

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MHDPVLESHHLVCEKPQTRRGIERRLALLLSATELFLEKGYDAVSLDDIVNHAGGSKTSIYKYFGNKDGLFTAICDYRRE
MFFKDICIAFQPEQTSLKDYLIQTLIRFYKHIIQPEHIAFLRLVIEQTQCNATLSQYLYEKCALDVQNTIAQALLISHQS
GEITCTSPDHSSLMYFGILRDIEWRMIMGMPLPPNETEVIDYINYCVDIFLKGHHKV

Sequences:

>Translated_217_residues
MHDPVLESHHLVCEKPQTRRGIERRLALLLSATELFLEKGYDAVSLDDIVNHAGGSKTSIYKYFGNKDGLFTAICDYRRE
MFFKDICIAFQPEQTSLKDYLIQTLIRFYKHIIQPEHIAFLRLVIEQTQCNATLSQYLYEKCALDVQNTIAQALLISHQS
GEITCTSPDHSSLMYFGILRDIEWRMIMGMPLPPNETEVIDYINYCVDIFLKGHHKV
>Mature_217_residues
MHDPVLESHHLVCEKPQTRRGIERRLALLLSATELFLEKGYDAVSLDDIVNHAGGSKTSIYKYFGNKDGLFTAICDYRRE
MFFKDICIAFQPEQTSLKDYLIQTLIRFYKHIIQPEHIAFLRLVIEQTQCNATLSQYLYEKCALDVQNTIAQALLISHQS
GEITCTSPDHSSLMYFGILRDIEWRMIMGMPLPPNETEVIDYINYCVDIFLKGHHKV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25093; Mature: 25093

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHDPVLESHHLVCEKPQTRRGIERRLALLLSATELFLEKGYDAVSLDDIVNHAGGSKTSI
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHH
YKYFGNKDGLFTAICDYRREMFFKDICIAFQPEQTSLKDYLIQTLIRFYKHIIQPEHIAF
EEECCCCCCHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
LRLVIEQTQCNATLSQYLYEKCALDVQNTIAQALLISHQSGEITCTSPDHSSLMYFGILR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHH
DIEWRMIMGMPLPPNETEVIDYINYCVDIFLKGHHKV
HCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MHDPVLESHHLVCEKPQTRRGIERRLALLLSATELFLEKGYDAVSLDDIVNHAGGSKTSI
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCHH
YKYFGNKDGLFTAICDYRREMFFKDICIAFQPEQTSLKDYLIQTLIRFYKHIIQPEHIAF
EEECCCCCCHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
LRLVIEQTQCNATLSQYLYEKCALDVQNTIAQALLISHQSGEITCTSPDHSSLMYFGILR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHH
DIEWRMIMGMPLPPNETEVIDYINYCVDIFLKGHHKV
HCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA