| Definition | Acinetobacter baumannii AB0057, complete genome. |
|---|---|
| Accession | NC_011586 |
| Length | 4,050,513 |
Click here to switch to the map view.
The map label for this gene is ydeP [H]
Identifier: 213158326
GI number: 213158326
Start: 3148146
End: 3150554
Strand: Reverse
Name: ydeP [H]
Synonym: AB57_3054
Alternate gene names: 213158326
Gene position: 3150554-3148146 (Counterclockwise)
Preceding gene: 213158328
Following gene: 213158325
Centisome position: 77.78
GC content: 44.25
Gene sequence:
>2409_bases GTGGATAATTCAGAAGAACAAAAGCACATACAGGAAAATAACGGTTTTGCGCGAATTGAGCCATATAGTCATCCTGCTGG CGGGTGGGGTGCACTTCTCAGTGTTGCTCGTAACTTAAAGCGACAAGATATTTTAGGTAAAGGTTCAATTACCTTACTCA ACATTAACCAACCTACAGGTTTTGACTGTCCCGGCTGTGCATGGCCAGAAAAGAAAGATGCTCATGCCTTTAACTTCTGT GAAAATGGTGCAAAGGCTGTTGCTTTTGAAGCAACCAGTAAAACCGTCACTCCTGAATATTTTGCAGGTCATACCGTCAG TTGGTTATCAGAACAAAGTGACTTTTTCCTAGAAGACCTAGGCCGCTTAACAGACCCAGTTCGTTATGATGCTGCAACCG ATAAATATGTGCCTATTTCATGGGACGATGCCTTTAAGCTCATCGCTCAACATTTGCATGCGCTAGATCATCCAGACCAA GCGGCATTTTATACCTCGGGCCGTGCCAGTAACGAAGCAGCATTTTTATATCAATTATTTGTACGAAGCTTTGGTACAAA TAACTTTCCCGACTGCTCAAACATGTGTCATGAAACCACAAGTGTTGGTTTGCTCGACTCGATTGGTTTAGGAAAGGGCA CAGTCACCCTAGAAGACTTTGATTTAGCCGACGCCATTTTTAGTTTTGGGCACAACCCGGGAACCAATCACCCGCGTATG TTAGGTACTTTGCGTGAAGTGTCTAAACGCGGCGGCAATATTATTGCGATTAACCCAATTAAAGAGCGAGGCCTCGAGCG TTTCCAAGACCCGCAAGCACCGCTTGAAATGATGACCAATGGCAGTACGCCAATTAGTCGCTATTATTTCCAGCCTAAAA TTGGCGGCGACTATGCACTGATGTTGGGTATTTTAAAGCACTTACATGAGTGGGATAAAAAGGCCCTTGCATCAGGCAAA CCAAGCGTTTTTGACCGAAACTTTATTGCAGTCAATACCGTTGGTTTCGACGAAATGATTGCCGAGGTAGAAAGAACGGA GTGGGCGGATCTTTATAAGCACTCAGGTCTGTCACCTGAACATTTGGAAAAACTGGCTAAACTCTTTTTAGAGTCAGAGC GTTCAATTTTCTGTTGGGGTATGGGGATTACCCAGCATCGTCACGGAACTGCTAACGTACATATGCTGGCAAATTTATTG TTGGCGCGTGGTCAAATTGGCAGACCGGGTGCAGGGCTTTGTCCGGTTCGTGGGCACAGTAACGTGCAAGGCGACCGCAC TATGGGCATTAATGAACTCCCAAGCCCGAAACTTCTCGACAATATTGACCGTGTGTTCGGTATTAAATCACCAAGAAAAA ATGGATATGGTGTGGTTGAAACCATTAAAGCCATGGCCGAAGGTGATATCAAAGTCTTTATTGGTTTGGGCGGAAACTTT GCCGTTGCAACACCTGACACCGCTTATACACAAGAAGCGCTTAGAAAATGTAATTTAACCGTACATGTGGCAACCAAGTT AAATCGTAGCCATTTGGTGTGTGGTAAAGATGCGCTTATTTTGCCATGTTTAGGCCGTACCGAAATTGATGAGCAGCTTC ATGGCCCACAAGCTATTACAGTTGAAGACTCAATGAGTAATGTCCACTTGTCGGCAGGGCGTAATACTCCAATTTCTAAA AATATTTTGTCTGAACCCGATATTGTGGCAAGAATGGCTGAGGCCGTGCTGCCAGAGAGTCAGATTAAATGGAAATGGTA CATTGAAAGCTATGACCGCATTCGTGACTCAATTGCCGATGTGTTTGATGAATTCCATGACTTTAATTTACGTGTTTATA AACCCGGCGGTTTCCATTTAGAACATCCAGCTAATCAGCACATCTGGAATACAAAGAGTGGTAAAGCGCAATTTCTGATT ACGCCACTTGAAGAAGTCTATGCGGATAAAGAAAATCAGTACGCTGCCGCATATACCGAAAGTAAGGTTTATACATTAAT GACCACCCGATCTCACGACCAATACAACACCACTTTATATGGTCTGGATGACCGTTACCGTGGGGTGTTTGGTCAGCGCC GTGTGTTGTTTATGAACCAAGCCGATATTGATGAAGCAGGCTTTGAAGCAAATCAGTGGGTTGATATTGAAAGTGTTTTC TCGGATGGTGTGAAGCGCATTGTGCACAGCTTCCGTATTGTGCCGTACAACATTCCACGAGGCAGTTTAGCGGCTTACTA TCCGGAAACCAATCCTTTGGTGGCCTTAAGCAGTCATGATAAATATGCCAAGATTCCGGCTTCTAAAAGTGTTCCTGTGA TTTTACATCCCGGAAATGCACCAGAGCATTTTAACTTGGCAACAGCTGTTGACCCTGAAGATGCCAATAAGAAAGTTAGC AGTCTTTAA
Upstream 100 bases:
>100_bases ACTCTACTCATCGGTAAACAGCGGGTAGCTTTGATAAAACCATAATTAAATTGTGATTTCACTGAGCCTATTGAGTGTAA AAAGATAAGAGGATGAAAAA
Downstream 100 bases:
>100_bases GTGAATCTGATTTTTTAAAATGAAATTTAAGCAAATGGCGCTCTAAACAAGCGCCATTTTGAAATAAAGGAAATAATTTT GACACCACATGCTTATGGGG
Product: oxidoreductase alpha (molybdopterin) subunit
Products: CO2; NADH
Alternate protein names: NA
Number of amino acids: Translated: 802; Mature: 802
Protein sequence:
>802_residues MDNSEEQKHIQENNGFARIEPYSHPAGGWGALLSVARNLKRQDILGKGSITLLNINQPTGFDCPGCAWPEKKDAHAFNFC ENGAKAVAFEATSKTVTPEYFAGHTVSWLSEQSDFFLEDLGRLTDPVRYDAATDKYVPISWDDAFKLIAQHLHALDHPDQ AAFYTSGRASNEAAFLYQLFVRSFGTNNFPDCSNMCHETTSVGLLDSIGLGKGTVTLEDFDLADAIFSFGHNPGTNHPRM LGTLREVSKRGGNIIAINPIKERGLERFQDPQAPLEMMTNGSTPISRYYFQPKIGGDYALMLGILKHLHEWDKKALASGK PSVFDRNFIAVNTVGFDEMIAEVERTEWADLYKHSGLSPEHLEKLAKLFLESERSIFCWGMGITQHRHGTANVHMLANLL LARGQIGRPGAGLCPVRGHSNVQGDRTMGINELPSPKLLDNIDRVFGIKSPRKNGYGVVETIKAMAEGDIKVFIGLGGNF AVATPDTAYTQEALRKCNLTVHVATKLNRSHLVCGKDALILPCLGRTEIDEQLHGPQAITVEDSMSNVHLSAGRNTPISK NILSEPDIVARMAEAVLPESQIKWKWYIESYDRIRDSIADVFDEFHDFNLRVYKPGGFHLEHPANQHIWNTKSGKAQFLI TPLEEVYADKENQYAAAYTESKVYTLMTTRSHDQYNTTLYGLDDRYRGVFGQRRVLFMNQADIDEAGFEANQWVDIESVF SDGVKRIVHSFRIVPYNIPRGSLAAYYPETNPLVALSSHDKYAKIPASKSVPVILHPGNAPEHFNLATAVDPEDANKKVS SL
Sequences:
>Translated_802_residues MDNSEEQKHIQENNGFARIEPYSHPAGGWGALLSVARNLKRQDILGKGSITLLNINQPTGFDCPGCAWPEKKDAHAFNFC ENGAKAVAFEATSKTVTPEYFAGHTVSWLSEQSDFFLEDLGRLTDPVRYDAATDKYVPISWDDAFKLIAQHLHALDHPDQ AAFYTSGRASNEAAFLYQLFVRSFGTNNFPDCSNMCHETTSVGLLDSIGLGKGTVTLEDFDLADAIFSFGHNPGTNHPRM LGTLREVSKRGGNIIAINPIKERGLERFQDPQAPLEMMTNGSTPISRYYFQPKIGGDYALMLGILKHLHEWDKKALASGK PSVFDRNFIAVNTVGFDEMIAEVERTEWADLYKHSGLSPEHLEKLAKLFLESERSIFCWGMGITQHRHGTANVHMLANLL LARGQIGRPGAGLCPVRGHSNVQGDRTMGINELPSPKLLDNIDRVFGIKSPRKNGYGVVETIKAMAEGDIKVFIGLGGNF AVATPDTAYTQEALRKCNLTVHVATKLNRSHLVCGKDALILPCLGRTEIDEQLHGPQAITVEDSMSNVHLSAGRNTPISK NILSEPDIVARMAEAVLPESQIKWKWYIESYDRIRDSIADVFDEFHDFNLRVYKPGGFHLEHPANQHIWNTKSGKAQFLI TPLEEVYADKENQYAAAYTESKVYTLMTTRSHDQYNTTLYGLDDRYRGVFGQRRVLFMNQADIDEAGFEANQWVDIESVF SDGVKRIVHSFRIVPYNIPRGSLAAYYPETNPLVALSSHDKYAKIPASKSVPVILHPGNAPEHFNLATAVDPEDANKKVS SL >Mature_802_residues MDNSEEQKHIQENNGFARIEPYSHPAGGWGALLSVARNLKRQDILGKGSITLLNINQPTGFDCPGCAWPEKKDAHAFNFC ENGAKAVAFEATSKTVTPEYFAGHTVSWLSEQSDFFLEDLGRLTDPVRYDAATDKYVPISWDDAFKLIAQHLHALDHPDQ AAFYTSGRASNEAAFLYQLFVRSFGTNNFPDCSNMCHETTSVGLLDSIGLGKGTVTLEDFDLADAIFSFGHNPGTNHPRM LGTLREVSKRGGNIIAINPIKERGLERFQDPQAPLEMMTNGSTPISRYYFQPKIGGDYALMLGILKHLHEWDKKALASGK PSVFDRNFIAVNTVGFDEMIAEVERTEWADLYKHSGLSPEHLEKLAKLFLESERSIFCWGMGITQHRHGTANVHMLANLL LARGQIGRPGAGLCPVRGHSNVQGDRTMGINELPSPKLLDNIDRVFGIKSPRKNGYGVVETIKAMAEGDIKVFIGLGGNF AVATPDTAYTQEALRKCNLTVHVATKLNRSHLVCGKDALILPCLGRTEIDEQLHGPQAITVEDSMSNVHLSAGRNTPISK NILSEPDIVARMAEAVLPESQIKWKWYIESYDRIRDSIADVFDEFHDFNLRVYKPGGFHLEHPANQHIWNTKSGKAQFLI TPLEEVYADKENQYAAAYTESKVYTLMTTRSHDQYNTTLYGLDDRYRGVFGQRRVLFMNQADIDEAGFEANQWVDIESVF SDGVKRIVHSFRIVPYNIPRGSLAAYYPETNPLVALSSHDKYAKIPASKSVPVILHPGNAPEHFNLATAVDPEDANKKVS SL
Specific function: Probably involved in acid resistance [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI1787778, Length=764, Percent_Identity=49.3455497382199, Blast_Score=770, Evalue=0.0, Organism=Escherichia coli, GI3868721, Length=370, Percent_Identity=27.027027027027, Blast_Score=142, Evalue=7e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR010046 [H]
Pfam domain/function: PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: 1.2.1.2
Molecular weight: Translated: 89242; Mature: 89242
Theoretical pI: Translated: 6.43; Mature: 6.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNSEEQKHIQENNGFARIEPYSHPAGGWGALLSVARNLKRQDILGKGSITLLNINQPTG CCCCHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC FDCPGCAWPEKKDAHAFNFCENGAKAVAFEATSKTVTPEYFAGHTVSWLSEQSDFFLEDL CCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCHHHCCCHHHHHHCCCHHHHHHH GRLTDPVRYDAATDKYVPISWDDAFKLIAQHLHALDHPDQAAFYTSGRASNEAAFLYQLF HHHCCCCEECCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH VRSFGTNNFPDCSNMCHETTSVGLLDSIGLGKGTVTLEDFDLADAIFSFGHNPGTNHPRM HHHHCCCCCCCHHHHHHHHHCCCCHHHCCCCCCEEEEECCHHHHHHHHCCCCCCCCCHHH LGTLREVSKRGGNIIAINPIKERGLERFQDPQAPLEMMTNGSTPISRYYFQPKIGGDYAL HHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCHHHHCCCCCCHHHEEECCCCCCCHHH MLGILKHLHEWDKKALASGKPSVFDRNFIAVNTVGFDEMIAEVERTEWADLYKHSGLSPE HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHH HLEKLAKLFLESERSIFCWGMGITQHRHGTANVHMLANLLLARGQIGRPGAGLCPVRGHS HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC NVQGDRTMGINELPSPKLLDNIDRVFGIKSPRKNGYGVVETIKAMAEGDIKVFIGLGGNF CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCE AVATPDTAYTQEALRKCNLTVHVATKLNRSHLVCGKDALILPCLGRTEIDEQLHGPQAIT EEECCCHHHHHHHHHHCCCEEEEEEECCCCEEEECCCCEEEECCCCCCHHHHHCCCEEEE VEDSMSNVHLSAGRNTPISKNILSEPDIVARMAEAVLPESQIKWKWYIESYDRIRDSIAD EECCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH VFDEFHDFNLRVYKPGGFHLEHPANQHIWNTKSGKAQFLITPLEEVYADKENQYAAAYTE HHHHHHCCCEEEECCCCCEECCCCCCCCCCCCCCCEEEEEECHHHHHCCCCCCEEEEEEC SKVYTLMTTRSHDQYNTTLYGLDDRYRGVFGQRRVLFMNQADIDEAGFEANQWVDIESVF CEEEEEEEECCCCCCCCEEEECCHHHHCCCCCCEEEEEECCCCCCCCCCCCCEECHHHHH SDGVKRIVHSFRIVPYNIPRGSLAAYYPETNPLVALSSHDKYAKIPASKSVPVILHPGNA HHHHHHHHHHCEEEEEECCCCCEEEECCCCCCEEEECCCCCEEECCCCCCCCEEECCCCC PEHFNLATAVDPEDANKKVSSL CCCCEEEEECCCCHHCHHHHCC >Mature Secondary Structure MDNSEEQKHIQENNGFARIEPYSHPAGGWGALLSVARNLKRQDILGKGSITLLNINQPTG CCCCHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC FDCPGCAWPEKKDAHAFNFCENGAKAVAFEATSKTVTPEYFAGHTVSWLSEQSDFFLEDL CCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCHHHCCCHHHHHHCCCHHHHHHH GRLTDPVRYDAATDKYVPISWDDAFKLIAQHLHALDHPDQAAFYTSGRASNEAAFLYQLF HHHCCCCEECCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHH VRSFGTNNFPDCSNMCHETTSVGLLDSIGLGKGTVTLEDFDLADAIFSFGHNPGTNHPRM HHHHCCCCCCCHHHHHHHHHCCCCHHHCCCCCCEEEEECCHHHHHHHHCCCCCCCCCHHH LGTLREVSKRGGNIIAINPIKERGLERFQDPQAPLEMMTNGSTPISRYYFQPKIGGDYAL HHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCHHHHCCCCCCHHHEEECCCCCCCHHH MLGILKHLHEWDKKALASGKPSVFDRNFIAVNTVGFDEMIAEVERTEWADLYKHSGLSPE HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCHH HLEKLAKLFLESERSIFCWGMGITQHRHGTANVHMLANLLLARGQIGRPGAGLCPVRGHS HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC NVQGDRTMGINELPSPKLLDNIDRVFGIKSPRKNGYGVVETIKAMAEGDIKVFIGLGGNF CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCE AVATPDTAYTQEALRKCNLTVHVATKLNRSHLVCGKDALILPCLGRTEIDEQLHGPQAIT EEECCCHHHHHHHHHHCCCEEEEEEECCCCEEEECCCCEEEECCCCCCHHHHHCCCEEEE VEDSMSNVHLSAGRNTPISKNILSEPDIVARMAEAVLPESQIKWKWYIESYDRIRDSIAD EECCCCEEEEECCCCCCCCHHHCCCCHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHH VFDEFHDFNLRVYKPGGFHLEHPANQHIWNTKSGKAQFLITPLEEVYADKENQYAAAYTE HHHHHHCCCEEEECCCCCEECCCCCCCCCCCCCCCEEEEEECHHHHHCCCCCCEEEEEEC SKVYTLMTTRSHDQYNTTLYGLDDRYRGVFGQRRVLFMNQADIDEAGFEANQWVDIESVF CEEEEEEEECCCCCCCCEEEECCHHHHCCCCCCEEEEEECCCCCCCCCCCCCEECHHHHH SDGVKRIVHSFRIVPYNIPRGSLAAYYPETNPLVALSSHDKYAKIPASKSVPVILHPGNA HHHHHHHHHHCEEEEEECCCCCEEEECCCCCCEEEECCCCCEEECCCCCCCCEEECCCCC PEHFNLATAVDPEDANKKVSSL CCCCEEEEECCCCHHCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: formate; NAD+
Specific reaction: formate + NAD+ = CO2 + NADH
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]