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The map label for this gene is pal [H]

Identifier: 213158280

GI number: 213158280

Start: 3096439

End: 3097002

Strand: Direct

Name: pal [H]

Synonym: AB57_3003

Alternate gene names: 213158280

Gene position: 3096439-3097002 (Clockwise)

Preceding gene: 213158279

Following gene: 213158282

Centisome position: 76.45

GC content: 43.09

Gene sequence:

>564_bases
ATGAAATCAATTAAATATTTGGCCTTTCCTCTACTTAGTGCGGCACTTGTCATGACAGGTTGTGCAAGTCGTAAGCCAGC
AACAACGGCAACTACAGGTACAACTAACCCAAGCACAGTAAATACGACAGGCTTAAGTGAAGATGCTGCATTAAATGCTC
AAAATCTAGCAGGTGCTTCTTCAAAAGGTGTAACTGAGGCAAACAAGGCTGCCCTAGCGAAACGTGTCGTTCACTTCGAT
TATGACAGTAGTGATTTATCTACTGAAGATTACCAAACACTTCAGGCTCATGCTCAGTTCCTCATGGCAAATGCAAACTC
AAAAGTTGCATTAACTGGTCATACAGACGAGCGCGGTACACGCGAATACAACATGGCCTTGGGTGAGCGCCGTGCAAAAG
CAGTTCAGAATTATCTTATTACCAGTGGTGTAAATCCTCAGCAACTTGAAGCTGTAAGTTATGGTAAAGAAGCGCCTGTT
AATCCTGGCCATGATGAATCAGCTTGGAAAGAAAACCGCCGCGTTGAAATTAACTATGAAGCGGTTCCTCCTCTATTAAA
ATAA

Upstream 100 bases:

>100_bases
TGATGGTCGTTTCCGTATGAATTTACCGAGTGAACAAGGTGAAGTACGTGAACCAGCCTGGGCACCTAAATAACTTTTTA
TTCCATTGATGGAGATGATG

Downstream 100 bases:

>100_bases
AACATCCCCAAAAATAAACGCCCAAATATGGGCGTTTATTTTTACATTCTTACTTTAAGAAGATTTGTTTTGCTCTTCTT
CTGAATGTTGCATTGACTCA

Product: peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MKSIKYLAFPLLSAALVMTGCASRKPATTATTGTTNPSTVNTTGLSEDAALNAQNLAGASSKGVTEANKAALAKRVVHFD
YDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDERGTREYNMALGERRAKAVQNYLITSGVNPQQLEAVSYGKEAPV
NPGHDESAWKENRRVEINYEAVPPLLK

Sequences:

>Translated_187_residues
MKSIKYLAFPLLSAALVMTGCASRKPATTATTGTTNPSTVNTTGLSEDAALNAQNLAGASSKGVTEANKAALAKRVVHFD
YDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDERGTREYNMALGERRAKAVQNYLITSGVNPQQLEAVSYGKEAPV
NPGHDESAWKENRRVEINYEAVPPLLK
>Mature_187_residues
MKSIKYLAFPLLSAALVMTGCASRKPATTATTGTTNPSTVNTTGLSEDAALNAQNLAGASSKGVTEANKAALAKRVVHFD
YDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDERGTREYNMALGERRAKAVQNYLITSGVNPQQLEAVSYGKEAPV
NPGHDESAWKENRRVEINYEAVPPLLK

Specific function: Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=173, Percent_Identity=38.150289017341, Blast_Score=115, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 20074; Mature: 20074

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSIKYLAFPLLSAALVMTGCASRKPATTATTGTTNPSTVNTTGLSEDAALNAQNLAGAS
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCHHCCHHHHCCCC
SKGVTEANKAALAKRVVHFDYDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDERGT
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
REYNMALGERRAKAVQNYLITSGVNPQQLEAVSYGKEAPVNPGHDESAWKENRRVEINYE
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEEEHH
AVPPLLK
CCCCCCC
>Mature Secondary Structure
MKSIKYLAFPLLSAALVMTGCASRKPATTATTGTTNPSTVNTTGLSEDAALNAQNLAGAS
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCHHCCHHHHCCCC
SKGVTEANKAALAKRVVHFDYDSSDLSTEDYQTLQAHAQFLMANANSKVALTGHTDERGT
CCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC
REYNMALGERRAKAVQNYLITSGVNPQQLEAVSYGKEAPVNPGHDESAWKENRRVEINYE
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCHHHHCCCCEEEEHH
AVPPLLK
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]