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The map label for this gene is dapD [H]

Identifier: 213158260

GI number: 213158260

Start: 3074899

End: 3075720

Strand: Direct

Name: dapD [H]

Synonym: AB57_2980

Alternate gene names: 213158260

Gene position: 3074899-3075720 (Clockwise)

Preceding gene: 213158258

Following gene: 213158261

Centisome position: 75.91

GC content: 40.63

Gene sequence:

>822_bases
ATGTCTCAGCTTTCTACGATCATTGAGCAAGCATTTGAAGACCGCGCAAATTTCACTGCAGCAGATTGCCCAAGCGAAAT
TCGCCAAGCTGTTGAAGAAGCAATTGCTGGTTTAGATAACGGTACACTTCGAGTTGCAGAAAAAATCAATGGTGAATGGG
TTGTTCATCAATGGTTAAAAAAAGCTGTTTTATTATCATTTAAACTTAATGACAATAAACCAATCGAGTCATGTGATCTT
CGTTTCTACGACAAAGTTGAAACTAAATTCTCTGGTTGGACTGAAGAGCAATTTAAAGCTGCGGGTGTTCGTGTTGTTCC
TCCTGCTGTTGCTCGTCGTGGTAGTTTCCAAGCTAAAAATGTGGTGTTAATGCCATCTTATGTCAACATTGGTGCTTACG
TAGATGAAGGCACAATGGTTGATACATGGGCAACTGTAGGTTCATGTGCTCAAATCGGTAAAAACGTTCACTTATCAGGT
GGTGTTGGTATCGGTGGTGTTTTAGAACCATTACAAGCTAACCCAACCATTATTGAAGACAACTGTTTTATCGGCGCACG
TTCTGAAATCGTTGAAGGTGTTATTGTCGAAGAAGGCTCTGTTATTTCTATGGGTGTTTATATCGGTCAATCTACACGTA
TTTATGATCGTGAGACTGGTGAAATCCATTATGGCCGTGTTCCTGCTGGCTCAGTTGTTGTACCAGGTAACTTACCGTCA
GCTGATGGTAAATACAGCTTATACGCTGCAATTATCGTGAAAAAAGTTGATGCACAAACACGTGCAAAAACAAGTTTGAA
CGATTTGTTACGCGCTGACTAA

Upstream 100 bases:

>100_bases
TTTAACTCATTTATACCTCAATTAAACGTAACACGTTTTTTCAAAGATTCTTGTCACAAATTAGTGTAAAATCTTTAAAA
TTTTTTATGGAAGGAAGATC

Downstream 100 bases:

>100_bases
TTTCAGTTTGATCAAACATCTCTACGATCAACACTGATCGTAGAGATTTTATTTTTTATATAGTGTGGTATTTCTAGAAT
GGCTTCCTTACGTTCCTCTG

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MSQLSTIIEQAFEDRANFTAADCPSEIRQAVEEAIAGLDNGTLRVAEKINGEWVVHQWLKKAVLLSFKLNDNKPIESCDL
RFYDKVETKFSGWTEEQFKAAGVRVVPPAVARRGSFQAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG
GVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVPGNLPS
ADGKYSLYAAIIVKKVDAQTRAKTSLNDLLRAD

Sequences:

>Translated_273_residues
MSQLSTIIEQAFEDRANFTAADCPSEIRQAVEEAIAGLDNGTLRVAEKINGEWVVHQWLKKAVLLSFKLNDNKPIESCDL
RFYDKVETKFSGWTEEQFKAAGVRVVPPAVARRGSFQAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG
GVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVPGNLPS
ADGKYSLYAAIIVKKVDAQTRAKTSLNDLLRAD
>Mature_272_residues
SQLSTIIEQAFEDRANFTAADCPSEIRQAVEEAIAGLDNGTLRVAEKINGEWVVHQWLKKAVLLSFKLNDNKPIESCDLR
FYDKVETKFSGWTEEQFKAAGVRVVPPAVARRGSFQAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGG
VGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVPGNLPSA
DGKYSLYAAIIVKKVDAQTRAKTSLNDLLRAD

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=271, Percent_Identity=76.3837638376384, Blast_Score=407, Evalue=1e-115,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR018357
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 29552; Mature: 29421

Theoretical pI: Translated: 4.90; Mature: 4.90

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQLSTIIEQAFEDRANFTAADCPSEIRQAVEEAIAGLDNGTLRVAEKINGEWVVHQWLK
CCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
KAVLLSFKLNDNKPIESCDLRFYDKVETKFSGWTEEQFKAAGVRVVPPAVARRGSFQAKN
HHEEEEEEECCCCCCCCCCCEEHHHHHHHCCCCCHHHHHHCCEEEECHHHHCCCCCCCCC
VVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED
EEEECCEEEECEEECCCCEEEHHHHHHHHHHHCCCEEECCCCCCCHHCCCCCCCCCEEEC
NCFIGARSEIVEGVIVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVPGNLPS
CCEECCHHHHHCEEEECCCCEEEEEEEECCCCEEEECCCCCEEECCCCCCCEEECCCCCC
ADGKYSLYAAIIVKKVDAQTRAKTSLNDLLRAD
CCCCCEEEEEEEHHHHCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SQLSTIIEQAFEDRANFTAADCPSEIRQAVEEAIAGLDNGTLRVAEKINGEWVVHQWLK
CHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHH
KAVLLSFKLNDNKPIESCDLRFYDKVETKFSGWTEEQFKAAGVRVVPPAVARRGSFQAKN
HHEEEEEEECCCCCCCCCCCEEHHHHHHHCCCCCHHHHHHCCEEEECHHHHCCCCCCCCC
VVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIED
EEEECCEEEECEEECCCCEEEHHHHHHHHHHHCCCEEECCCCCCCHHCCCCCCCCCEEEC
NCFIGARSEIVEGVIVEEGSVISMGVYIGQSTRIYDRETGEIHYGRVPAGSVVVPGNLPS
CCEECCHHHHHCEEEECCCCEEEEEEEECCCCEEEECCCCCEEECCCCCCCEEECCCCCC
ADGKYSLYAAIIVKKVDAQTRAKTSLNDLLRAD
CCCCCEEEEEEEHHHHCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA