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The map label for this gene is ygcF [C]

Identifier: 213158261

GI number: 213158261

Start: 3075799

End: 3076509

Strand: Direct

Name: ygcF [C]

Synonym: AB57_2981

Alternate gene names: 213158261

Gene position: 3075799-3076509 (Clockwise)

Preceding gene: 213158260

Following gene: 213158262

Centisome position: 75.94

GC content: 44.3

Gene sequence:

>711_bases
ATGGCTTCCTTACGTTCCTCTGCAATTCCTGTCTCTGACCCTGCGTCTGGTCTACGCATTACCGAGATTTTTTACTCCTT
GCAGGGTGAAGCAAATGCCTCTGGCCTACCGACTGTATTTATTCGTCTCACAGGATGCCCTTTACGTTGTAGTTATTGCG
ACACCACCTATTCTTTTGAAGGTGGCGAACGCTTATCACTTGAGCACATTATTGAAACGGCTGAAAAATATCAAACGCCT
TATATTTGTGTAACAGGCGGTGAACCCCTAGCACAACCCAATTGCTTAATTTTATTACAACGTTTATGTGACGCCGGTTT
TGACGTTTCCCTAGAAACCAGTGGCGCTCTTGATGTATCAAGAGTGGATCCGCGTGTTTCAAAAGTCCTCGACTTAAAGA
CTCCAACTTCTGGTGAAGAACACCGTAATCTCATCAGTAATCTTGACCATTTAACACCGCGTGACCAAATCAAATTTGTG
ATTTGTAATCGTGAAGACTATGAATGGTCAAAACAACAAGTTGAACAATATCAACTGCAAACCAAAGTCAGTACTGTTTG
GTTCTCCCCTGCTTTTGCGGTTGAAAAAGGTGCTGTTGGCCTGCCACGTTTAGCACGTGATCTGGCACAGTGGATACTGG
ACGACAAACTGCCTGTACGTTTCCAGCTACAGTTACACAAACTGCTCTGGAACGATGAATCAGGTCGCTAA

Upstream 100 bases:

>100_bases
CGATTTGTTACGCGCTGACTAATTTCAGTTTGATCAAACATCTCTACGATCAACACTGATCGTAGAGATTTTATTTTTTA
TATAGTGTGGTATTTCTAGA

Downstream 100 bases:

>100_bases
GCGTTCAATAAAATAAATCATTCCGAATATGGAGAAAAATATGCGCCCTCGTGCCATTGTTTTACTTTCAGGCGGCTTAG
ACTCAACCACTTGCCTAGCT

Product: radical SAM domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MASLRSSAIPVSDPASGLRITEIFYSLQGEANASGLPTVFIRLTGCPLRCSYCDTTYSFEGGERLSLEHIIETAEKYQTP
YICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGALDVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFV
ICNREDYEWSKQQVEQYQLQTKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLLWNDESGR

Sequences:

>Translated_236_residues
MASLRSSAIPVSDPASGLRITEIFYSLQGEANASGLPTVFIRLTGCPLRCSYCDTTYSFEGGERLSLEHIIETAEKYQTP
YICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGALDVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFV
ICNREDYEWSKQQVEQYQLQTKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLLWNDESGR
>Mature_235_residues
ASLRSSAIPVSDPASGLRITEIFYSLQGEANASGLPTVFIRLTGCPLRCSYCDTTYSFEGGERLSLEHIIETAEKYQTPY
ICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGALDVSRVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVI
CNREDYEWSKQQVEQYQLQTKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLLWNDESGR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=122, Percent_Identity=33.6065573770492, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 26461; Mature: 26330

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLRSSAIPVSDPASGLRITEIFYSLQGEANASGLPTVFIRLTGCPLRCSYCDTTYSFE
CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEECCCEEECC
GGERLSLEHIIETAEKYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGALDVS
CCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCCEEHH
RVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVICNREDYEWSKQQVEQYQLQ
HCCHHHHHHEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
TKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLLWNDESGR
HHHEEEEECCHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCCC
>Mature Secondary Structure 
ASLRSSAIPVSDPASGLRITEIFYSLQGEANASGLPTVFIRLTGCPLRCSYCDTTYSFE
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEECCCEEECC
GGERLSLEHIIETAEKYQTPYICVTGGEPLAQPNCLILLQRLCDAGFDVSLETSGALDVS
CCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEECCCCEEHH
RVDPRVSKVLDLKTPTSGEEHRNLISNLDHLTPRDQIKFVICNREDYEWSKQQVEQYQLQ
HCCHHHHHHEECCCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
TKVSTVWFSPAFAVEKGAVGLPRLARDLAQWILDDKLPVRFQLQLHKLLWNDESGR
HHHEEEEECCHHHHCCCCCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]