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The map label for this gene is rarD [C]

Identifier: 213158226

GI number: 213158226

Start: 3042689

End: 3043633

Strand: Reverse

Name: rarD [C]

Synonym: AB57_2945

Alternate gene names: 213158226

Gene position: 3043633-3042689 (Counterclockwise)

Preceding gene: 213158227

Following gene: 213158225

Centisome position: 75.14

GC content: 37.57

Gene sequence:

>945_bases
ATGTTAAAGGGCGTGATTTTGTCTGTCATGGCATCATTAACTTTTGGTGTTCTTTATTTTTATACCCAATTACTCGGCCA
GCTTGATAGTGAACAGACTTTCGGATGGCGTATTATTGCGACTTTGCCATTTTTAACTTTATTTATGTGGTGGAGTGGTG
ATTTAAGCCATATTAAAAATATATATCAACGTATTTTAGCAAAACCTTCTTTACTTCTATTACTCATTACAACATCCGTT
TTGACTTCGGTGCAGTTATGGCTGTTTTTATGGGGACCTATGCATGGACGTGGTTTGCAAGTTTCTTTGGGATATTTCCT
GTTACCGCTTGTTTTGGTTTTAGCGGGTAGTGTCTTATATGGAGAGAAAATATCGAAATTTCAGTGGGTCGCTATTGTTC
TTGCAATTATTGGTGTAGGACATGAGATTTTTAGACTAGGAAGTATTGCTTGGGAAACTGCTTTAGTGGCTATAGGTTAT
TCCGCTTATTTCTTGTTACGTAAGAAAATTAAAACGGATAATTTAGGGGGCTTTTGGTGGGACCTTCTGATTATTATGCC
AGTTGCAATCTATCTGACACATACAGGGTTATTGCCATATAGTAAGTTCCTCGATCAGCCGACACTCGGGTTGGTTATTG
CGGGTTTAGGCGTGCTTAGTGCTATAGGCTTGGGATGTTATATATTGGCAAGCCGTTATTTGCCTTTGGTTGTGTTTGGA
CTGCTTGGATATCTTGAACCGGTGTTACTTGCTTTAGCATCTTTAGTGTTAGGGGAAAGTATTGGTAAAGAAGAATGGTT
TACTTATCTTCCAATTTGGTGTGCCGTTTTCGTATTGGTTTTAGAAGGGGCTTTTCATCTTTACCAACAGCAGCAAAAAG
CCAAAAATTTGCTATTAAATATCGAAAAATATCAAAAAAGATTAAAAAATGATGCTCACGATTAG

Upstream 100 bases:

>100_bases
AAAGAAAAAACCATGTTTTCGCATGGTTTTTTCTTTTTTATAGTGGATAAATCAAGTATTGTATCGCTTTTATTTTTCTT
AAAGTATAAAGAGGTTAGTG

Downstream 100 bases:

>100_bases
AGCATCAAAATCTAAAAAGTAAGAAAAAGCAAAAATTTAGCGGCTTTAAACAATAAGATAATAAAAAATAATTATAGGTA
TTTTATGAATTTATGATGAA

Product: RarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MLKGVILSVMASLTFGVLYFYTQLLGQLDSEQTFGWRIIATLPFLTLFMWWSGDLSHIKNIYQRILAKPSLLLLLITTSV
LTSVQLWLFLWGPMHGRGLQVSLGYFLLPLVLVLAGSVLYGEKISKFQWVAIVLAIIGVGHEIFRLGSIAWETALVAIGY
SAYFLLRKKIKTDNLGGFWWDLLIIMPVAIYLTHTGLLPYSKFLDQPTLGLVIAGLGVLSAIGLGCYILASRYLPLVVFG
LLGYLEPVLLALASLVLGESIGKEEWFTYLPIWCAVFVLVLEGAFHLYQQQQKAKNLLLNIEKYQKRLKNDAHD

Sequences:

>Translated_314_residues
MLKGVILSVMASLTFGVLYFYTQLLGQLDSEQTFGWRIIATLPFLTLFMWWSGDLSHIKNIYQRILAKPSLLLLLITTSV
LTSVQLWLFLWGPMHGRGLQVSLGYFLLPLVLVLAGSVLYGEKISKFQWVAIVLAIIGVGHEIFRLGSIAWETALVAIGY
SAYFLLRKKIKTDNLGGFWWDLLIIMPVAIYLTHTGLLPYSKFLDQPTLGLVIAGLGVLSAIGLGCYILASRYLPLVVFG
LLGYLEPVLLALASLVLGESIGKEEWFTYLPIWCAVFVLVLEGAFHLYQQQQKAKNLLLNIEKYQKRLKNDAHD
>Mature_314_residues
MLKGVILSVMASLTFGVLYFYTQLLGQLDSEQTFGWRIIATLPFLTLFMWWSGDLSHIKNIYQRILAKPSLLLLLITTSV
LTSVQLWLFLWGPMHGRGLQVSLGYFLLPLVLVLAGSVLYGEKISKFQWVAIVLAIIGVGHEIFRLGSIAWETALVAIGY
SAYFLLRKKIKTDNLGGFWWDLLIIMPVAIYLTHTGLLPYSKFLDQPTLGLVIAGLGVLSAIGLGCYILASRYLPLVVFG
LLGYLEPVLLALASLVLGESIGKEEWFTYLPIWCAVFVLVLEGAFHLYQQQQKAKNLLLNIEKYQKRLKNDAHD

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=296, Percent_Identity=28.0405405405405, Blast_Score=114, Evalue=7e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 35228; Mature: 35228

Theoretical pI: Translated: 9.29; Mature: 9.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKGVILSVMASLTFGVLYFYTQLLGQLDSEQTFGWRIIATLPFLTLFMWWSGDLSHIKN
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
IYQRILAKPSLLLLLITTSVLTSVQLWLFLWGPMHGRGLQVSLGYFLLPLVLVLAGSVLY
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCCHHH
GEKISKFQWVAIVLAIIGVGHEIFRLGSIAWETALVAIGYSAYFLLRKKIKTDNLGGFWW
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
DLLIIMPVAIYLTHTGLLPYSKFLDQPTLGLVIAGLGVLSAIGLGCYILASRYLPLVVFG
HHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLGYLEPVLLALASLVLGESIGKEEWFTYLPIWCAVFVLVLEGAFHLYQQQQKAKNLLLN
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEKYQKRLKNDAHD
HHHHHHHHCCCCCC
>Mature Secondary Structure
MLKGVILSVMASLTFGVLYFYTQLLGQLDSEQTFGWRIIATLPFLTLFMWWSGDLSHIKN
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH
IYQRILAKPSLLLLLITTSVLTSVQLWLFLWGPMHGRGLQVSLGYFLLPLVLVLAGSVLY
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCCHHH
GEKISKFQWVAIVLAIIGVGHEIFRLGSIAWETALVAIGYSAYFLLRKKIKTDNLGGFWW
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
DLLIIMPVAIYLTHTGLLPYSKFLDQPTLGLVIAGLGVLSAIGLGCYILASRYLPLVVFG
HHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLGYLEPVLLALASLVLGESIGKEEWFTYLPIWCAVFVLVLEGAFHLYQQQQKAKNLLLN
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEKYQKRLKNDAHD
HHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]