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The map label for this gene is yddE [C]

Identifier: 213158195

GI number: 213158195

Start: 3005808

End: 3006629

Strand: Reverse

Name: yddE [C]

Synonym: AB57_2912

Alternate gene names: 213158195

Gene position: 3006629-3005808 (Counterclockwise)

Preceding gene: 213158196

Following gene: 213158194

Centisome position: 74.23

GC content: 37.59

Gene sequence:

>822_bases
ATGAAAATGTATCAAGTCGATGCTTTTACCAAAGAGCTATTTCGTGGAAATCCGGCTGCTGTGATTGTTGGAAAAGAGTG
GCCAGATGCAGATTTAATGCAAAAGATAGCACTTGAAAATAACTTATCTGAGACTGCTTTTGTAAAAATTATAGACTCTG
AAAATTATGAAATACGTTGGTTTACTCCAACGGTTGAGGTGGATTTTTGCGGGCATGCGACTCTTGCGAGTGCTTTCGTA
TTATTTAAAGATTTTACTGAGAAAAAGACTCTTAATTTTCATGTACGAAACTTAGGTTTGTTTGTAGTTCATCAAGATGA
AGACGGCAAAATCAGAATGGATTTTCCAATTCGTAAAGCTCAGCAAGTTGAAGATTATCCGGCTATTTTACGTCAAGCAT
TAACAAAACCTTTTAAAGCGGTTTATCAAAATATTCAAGCCTACATTGTTGAATATGAGTCAGTGCAAGATGTGTTAGAT
GAGCAACCTGACATGAACTTACTTAAAGCCTTAGGTAAGCGGACTGCAATTACAACTACAGCAATGGATGTTGCAATCAC
CTCAAAAGCTGACGATCAATATGACTGTGTTTCTCGTTATTTTGCACCTGTCGCAGGCATTGATGAAGACCCGGTTACTG
GTTCAATTCATACCGCAATAGCGCCACTATGGGCAGAGAAACTCGCTAAAAATAATATTGTGGCCTATCAGGCTTCTAGC
CGTGGAGGCGTTTTGTATTGTAATGTCTTAAATCAGGAACGTATTGAAATTTCGGGATATGGCAAACTTTATATGCAAGC
CGAAATTTTCCTTAAAATATAA

Upstream 100 bases:

>100_bases
TGTGTAACTTGCAACTGTGATGTTAATTTTTAAAAAACTGTATCTATTTTTCTTTTAAATAATTTTCGAAAATGAGCCTA
TTAAGAAAGAGAGCACTAAC

Downstream 100 bases:

>100_bases
GGCCGTTTAAATAAACGGTTCTTTTTTCAAATTCTTTACTATGAAAGTCAGCTCAAATTTCCTACTATAGTCACACAACT
ATTGATTTTTTATTATTCAA

Product: phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MKMYQVDAFTKELFRGNPAAVIVGKEWPDADLMQKIALENNLSETAFVKIIDSENYEIRWFTPTVEVDFCGHATLASAFV
LFKDFTEKKTLNFHVRNLGLFVVHQDEDGKIRMDFPIRKAQQVEDYPAILRQALTKPFKAVYQNIQAYIVEYESVQDVLD
EQPDMNLLKALGKRTAITTTAMDVAITSKADDQYDCVSRYFAPVAGIDEDPVTGSIHTAIAPLWAEKLAKNNIVAYQASS
RGGVLYCNVLNQERIEISGYGKLYMQAEIFLKI

Sequences:

>Translated_273_residues
MKMYQVDAFTKELFRGNPAAVIVGKEWPDADLMQKIALENNLSETAFVKIIDSENYEIRWFTPTVEVDFCGHATLASAFV
LFKDFTEKKTLNFHVRNLGLFVVHQDEDGKIRMDFPIRKAQQVEDYPAILRQALTKPFKAVYQNIQAYIVEYESVQDVLD
EQPDMNLLKALGKRTAITTTAMDVAITSKADDQYDCVSRYFAPVAGIDEDPVTGSIHTAIAPLWAEKLAKNNIVAYQASS
RGGVLYCNVLNQERIEISGYGKLYMQAEIFLKI
>Mature_273_residues
MKMYQVDAFTKELFRGNPAAVIVGKEWPDADLMQKIALENNLSETAFVKIIDSENYEIRWFTPTVEVDFCGHATLASAFV
LFKDFTEKKTLNFHVRNLGLFVVHQDEDGKIRMDFPIRKAQQVEDYPAILRQALTKPFKAVYQNIQAYIVEYESVQDVLD
EQPDMNLLKALGKRTAITTTAMDVAITSKADDQYDCVSRYFAPVAGIDEDPVTGSIHTAIAPLWAEKLAKNNIVAYQASS
RGGVLYCNVLNQERIEISGYGKLYMQAEIFLKI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Homo sapiens, GI62177133, Length=287, Percent_Identity=34.1463414634146, Blast_Score=140, Evalue=1e-33,
Organism=Homo sapiens, GI74316009, Length=252, Percent_Identity=35.3174603174603, Blast_Score=121, Evalue=6e-28,
Organism=Escherichia coli, GI1787737, Length=301, Percent_Identity=29.9003322259136, Blast_Score=88, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17542160, Length=311, Percent_Identity=31.5112540192926, Blast_Score=133, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17542154, Length=311, Percent_Identity=31.5112540192926, Blast_Score=133, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI17542158, Length=315, Percent_Identity=29.5238095238095, Blast_Score=127, Evalue=8e-30,
Organism=Caenorhabditis elegans, GI17542152, Length=315, Percent_Identity=29.5238095238095, Blast_Score=127, Evalue=8e-30,
Organism=Saccharomyces cerevisiae, GI6321818, Length=234, Percent_Identity=29.0598290598291, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 30897; Mature: 30897

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMYQVDAFTKELFRGNPAAVIVGKEWPDADLMQKIALENNLSETAFVKIIDSENYEIRW
CCEEEHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEECCCEEEEE
FTPTVEVDFCGHATLASAFVLFKDFTEKKTLNFHVRNLGLFVVHQDEDGKIRMDFPIRKA
EECEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEECCCCEEEECCCCCHH
QQVEDYPAILRQALTKPFKAVYQNIQAYIVEYESVQDVLDEQPDMNLLKALGKRTAITTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHCCCCHHHHHHCCCCCEEEEE
AMDVAITSKADDQYDCVSRYFAPVAGIDEDPVTGSIHTAIAPLWAEKLAKNNIVAYQASS
EEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
RGGVLYCNVLNQERIEISGYGKLYMQAEIFLKI
CCCEEEEEECCCCEEEEECCCEEEEEEEEEEEC
>Mature Secondary Structure
MKMYQVDAFTKELFRGNPAAVIVGKEWPDADLMQKIALENNLSETAFVKIIDSENYEIRW
CCEEEHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEEECCCEEEEE
FTPTVEVDFCGHATLASAFVLFKDFTEKKTLNFHVRNLGLFVVHQDEDGKIRMDFPIRKA
EECEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEECCCCEEEECCCCCHH
QQVEDYPAILRQALTKPFKAVYQNIQAYIVEYESVQDVLDEQPDMNLLKALGKRTAITTT
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHCCCCHHHHHHCCCCCEEEEE
AMDVAITSKADDQYDCVSRYFAPVAGIDEDPVTGSIHTAIAPLWAEKLAKNNIVAYQASS
EEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC
RGGVLYCNVLNQERIEISGYGKLYMQAEIFLKI
CCCEEEEEECCCCEEEEECCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]