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The map label for this gene is ydiU [C]

Identifier: 213157894

GI number: 213157894

Start: 3490955

End: 3492397

Strand: Direct

Name: ydiU [C]

Synonym: AB57_3386

Alternate gene names: 213157894

Gene position: 3490955-3492397 (Clockwise)

Preceding gene: 213157893

Following gene: 213157897

Centisome position: 86.19

GC content: 42.69

Gene sequence:

>1443_bases
ATGCAATTTAATCCGCTTTATTCATCGCTCAATCCTAAGCTTTTTCATATCCAGCAACCCTCTCCGCTTCGCGGTGCAAA
GGTTGGACACTTTAATTTAGCTTTAGCCGAAGAGTTACAATGGACAGATGAAGAAAAACAGGCTTGGGTAGAAATTTGCA
GTGGTCAGCGTACCTTCTCGGAATTCCCGCCTTTGGCTATGGTGTATGCAGGCCATCAGTTTGGGCAATGGGCCGGTCAA
CTAGGCGACGGACGTGGCTTACTCATTGCGCAGATTCTTAATAAAAAAGGCCAAACCATAGATTTACATTTAAAAGGTGC
AGGTCCTACACCCTATTCGCGCATGGGAGATGGGCGAGCAGTTTTACGCTCTGTTATTCGTGAATATTTAGCAGGACATG
CTTTAAATGCTTTAGGGGTGGCTTCTAGTCACGCAGTAGGTTTTACAAGCTCCACTCAAGGTGTACAGCGTGAAAAGCTA
GAACCTGGCGCAATGTTACTTAGAACATCTGAATGTCATATCCGTTTAGGCCATTTTGAATGGATCAATCAATATGCACC
TGAGCTATTGGCCGAGTTCACTCAAAAATGTATTGAATGGCACTATCCAGAATGCCAACAAGAAGAGCAACCTATTTTAG
CTTTTGCTAAAGCTGTGATTAGAAATACAGCCATTATGATCGCCAAATGGCAGTTGGTCGGTTTTGCTCATGGTGTGATG
AATACCGATAACTTAAATATTACGGGTTCTACACTCGATTTTGGTCCATACGGTTTTATGGAACGTTTCCGACCAAATTG
GATTAACAACCATTCCGATTACCAAGGGCGTTACACCTATCAAAACCAACCGAGTATTGCGCACTGGAACTTATGGACTT
GGTTAAATAATCTCATTCCACTTGCCGAACCTGAGCATAAAGAGCAGTTCAAAGAAGCGCTGGCCGCTTGCCTAGAAGAA
TTTGAGCCGACTTTTATTGAGCATTACACCACTGGGTTATGTCAAAAAATGGGGCTTCCTCATTTTCATAAAGACAGTAC
TGAATGCGGCTTAAGCTTTTTGCGTATTCTGCAAGCGGAGCAGCTCGATTACACCCAAAGCTTCATTCGCCTTCAAAATA
AAGAATACAAAGCTTTACGTGATGACTGCCTTGATATTCGACAATTTGATGCATTCCTTACGCAGTATCAAAACATCCGT
GAATATCAAGATATTGATGAGCTTGATGCAAACATGCAGCAGGTAAATCCAATTTATATCTTACGTAACCATATGGCACA
GAGAGCTATTGAGGCAGCGGAGCGAGATGATTTTAGTGAGGTTGATCGCTTATTCAAGCTACTCAACCATCCCTATACAA
AGCAATCAGATTTGGAAAAACCGGAAGATTTAGGTCCGTTACCAAGCGATGTACCTGATGTAGCGGTGAGCTGTTCTTCT
TAA

Upstream 100 bases:

>100_bases
CGAAATAGCACCTGTAGAGCCATACTTTGCAGGTGCTATTTTTTTGGCTTGTTTTTAACTATGGTATAGTGAATTTTGCC
TCAAATATTTAGTCCAGCCT

Downstream 100 bases:

>100_bases
TTTTTTATCCACATTTTCTGTGGATAACATTGTGGTTATCCACAGCATAACTTTTCTAAGCAATTATTCTTCTGGATATT
CGAAGCGATAACCTACTCCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 480

Protein sequence:

>480_residues
MQFNPLYSSLNPKLFHIQQPSPLRGAKVGHFNLALAEELQWTDEEKQAWVEICSGQRTFSEFPPLAMVYAGHQFGQWAGQ
LGDGRGLLIAQILNKKGQTIDLHLKGAGPTPYSRMGDGRAVLRSVIREYLAGHALNALGVASSHAVGFTSSTQGVQREKL
EPGAMLLRTSECHIRLGHFEWINQYAPELLAEFTQKCIEWHYPECQQEEQPILAFAKAVIRNTAIMIAKWQLVGFAHGVM
NTDNLNITGSTLDFGPYGFMERFRPNWINNHSDYQGRYTYQNQPSIAHWNLWTWLNNLIPLAEPEHKEQFKEALAACLEE
FEPTFIEHYTTGLCQKMGLPHFHKDSTECGLSFLRILQAEQLDYTQSFIRLQNKEYKALRDDCLDIRQFDAFLTQYQNIR
EYQDIDELDANMQQVNPIYILRNHMAQRAIEAAERDDFSEVDRLFKLLNHPYTKQSDLEKPEDLGPLPSDVPDVAVSCSS

Sequences:

>Translated_480_residues
MQFNPLYSSLNPKLFHIQQPSPLRGAKVGHFNLALAEELQWTDEEKQAWVEICSGQRTFSEFPPLAMVYAGHQFGQWAGQ
LGDGRGLLIAQILNKKGQTIDLHLKGAGPTPYSRMGDGRAVLRSVIREYLAGHALNALGVASSHAVGFTSSTQGVQREKL
EPGAMLLRTSECHIRLGHFEWINQYAPELLAEFTQKCIEWHYPECQQEEQPILAFAKAVIRNTAIMIAKWQLVGFAHGVM
NTDNLNITGSTLDFGPYGFMERFRPNWINNHSDYQGRYTYQNQPSIAHWNLWTWLNNLIPLAEPEHKEQFKEALAACLEE
FEPTFIEHYTTGLCQKMGLPHFHKDSTECGLSFLRILQAEQLDYTQSFIRLQNKEYKALRDDCLDIRQFDAFLTQYQNIR
EYQDIDELDANMQQVNPIYILRNHMAQRAIEAAERDDFSEVDRLFKLLNHPYTKQSDLEKPEDLGPLPSDVPDVAVSCSS
>Mature_480_residues
MQFNPLYSSLNPKLFHIQQPSPLRGAKVGHFNLALAEELQWTDEEKQAWVEICSGQRTFSEFPPLAMVYAGHQFGQWAGQ
LGDGRGLLIAQILNKKGQTIDLHLKGAGPTPYSRMGDGRAVLRSVIREYLAGHALNALGVASSHAVGFTSSTQGVQREKL
EPGAMLLRTSECHIRLGHFEWINQYAPELLAEFTQKCIEWHYPECQQEEQPILAFAKAVIRNTAIMIAKWQLVGFAHGVM
NTDNLNITGSTLDFGPYGFMERFRPNWINNHSDYQGRYTYQNQPSIAHWNLWTWLNNLIPLAEPEHKEQFKEALAACLEE
FEPTFIEHYTTGLCQKMGLPHFHKDSTECGLSFLRILQAEQLDYTQSFIRLQNKEYKALRDDCLDIRQFDAFLTQYQNIR
EYQDIDELDANMQQVNPIYILRNHMAQRAIEAAERDDFSEVDRLFKLLNHPYTKQSDLEKPEDLGPLPSDVPDVAVSCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=345, Percent_Identity=37.1014492753623, Blast_Score=215, Evalue=7e-56,
Organism=Escherichia coli, GI1787999, Length=478, Percent_Identity=38.9121338912134, Blast_Score=339, Evalue=2e-94,
Organism=Saccharomyces cerevisiae, GI6325034, Length=470, Percent_Identity=28.936170212766, Blast_Score=181, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 54922; Mature: 54922

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFNPLYSSLNPKLFHIQQPSPLRGAKVGHFNLALAEELQWTDEEKQAWVEICSGQRTFS
CCCCCCHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHH
EFPPLAMVYAGHQFGQWAGQLGDGRGLLIAQILNKKGQTIDLHLKGAGPTPYSRMGDGRA
HCCCEEEECCCCHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCHHHCCCCHH
VLRSVIREYLAGHALNALGVASSHAVGFTSSTQGVQREKLEPGAMLLRTSECHIRLGHFE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCEEEECHHH
WINQYAPELLAEFTQKCIEWHYPECQQEEQPILAFAKAVIRNTAIMIAKWQLVGFAHGVM
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHCCC
NTDNLNITGSTLDFGPYGFMERFRPNWINNHSDYQGRYTYQNQPSIAHWNLWTWLNNLIP
CCCCCEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEHHHHHHHCCCC
LAEPEHKEQFKEALAACLEEFEPTFIEHYTTGLCQKMGLPHFHKDSTECGLSFLRILQAE
CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
QLDYTQSFIRLQNKEYKALRDDCLDIRQFDAFLTQYQNIREYQDIDELDANMQQVNPIYI
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHH
LRNHMAQRAIEAAERDDFSEVDRLFKLLNHPYTKQSDLEKPEDLGPLPSDVPDVAVSCSS
HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCEEECCC
>Mature Secondary Structure
MQFNPLYSSLNPKLFHIQQPSPLRGAKVGHFNLALAEELQWTDEEKQAWVEICSGQRTFS
CCCCCCHHCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHH
EFPPLAMVYAGHQFGQWAGQLGDGRGLLIAQILNKKGQTIDLHLKGAGPTPYSRMGDGRA
HCCCEEEECCCCHHHHHHHCCCCCCCHHHHHHHCCCCCEEEEEEECCCCCCHHHCCCCHH
VLRSVIREYLAGHALNALGVASSHAVGFTSSTQGVQREKLEPGAMLLRTSECHIRLGHFE
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCEEEECHHH
WINQYAPELLAEFTQKCIEWHYPECQQEEQPILAFAKAVIRNTAIMIAKWQLVGFAHGVM
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHCCC
NTDNLNITGSTLDFGPYGFMERFRPNWINNHSDYQGRYTYQNQPSIAHWNLWTWLNNLIP
CCCCCEEECCCCCCCCHHHHHHCCCCCCCCCCCCCCEEEECCCCCEEEEHHHHHHHCCCC
LAEPEHKEQFKEALAACLEEFEPTFIEHYTTGLCQKMGLPHFHKDSTECGLSFLRILQAE
CCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
QLDYTQSFIRLQNKEYKALRDDCLDIRQFDAFLTQYQNIREYQDIDELDANMQQVNPIYI
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHH
LRNHMAQRAIEAAERDDFSEVDRLFKLLNHPYTKQSDLEKPEDLGPLPSDVPDVAVSCSS
HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA