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The map label for this gene is ygfZ [C]

Identifier: 213157840

GI number: 213157840

Start: 3430032

End: 3430754

Strand: Direct

Name: ygfZ [C]

Synonym: AB57_3324

Alternate gene names: 213157840

Gene position: 3430032-3430754 (Clockwise)

Preceding gene: 213157835

Following gene: 213157841

Centisome position: 84.68

GC content: 41.08

Gene sequence:

>723_bases
ATGAGTCTGCTCGCTTTCTCCTCATATGCATTAAACGGTGTAGATGCACAAAAGTTTTTACAAGGCCAAGTGACTGTAGA
TACTGAACGTTTAGCTGAAAATGAAACACGCTATACAGCCATTTGTGATCTTAAAGGCCGCATCCATTTTGGCTTGTGGC
TAAAAAAGAATAATGCAGAAAGTTTTGACATTATTGTCACTCAAGATCAAGCTGAAGAATTGGCGAAGCACATTAAAAAA
TATGGTGCTTTTTCAAAAATGACCTTAAGTGAACAAGGTGCTGTATTCCCAAAAGTTGTGAATGGCCATACTGAGTTCAG
CTCTACAGAAACTGATATTTCCGAATGGCAAAAACAAGCCATCATGACAGGTCAAGCATGGATTGCTCAAGCGACTGAAC
ATGAGTTTCAGCCACAAGAATTACGTTTACATCAACGCGAAGGCGTCAATTACGATAAAGGCTGTTACTTAGGTCAAGAA
ATTGTGGCGCGCCTTTGGTTTAAGGCAAAACCAAAACACTGGTTGCATTTAGTTCAAGGTACGGGTGATGCACCTGCTCC
AGCAACTCAACTGCACAATGACGTAGAAGTGGTTAATAGTACCCAAACTACTGACGGTTATATTGCCTTAGTTGTTGCGA
AACCTGCCGCCCTTCAAGAGTTAGGGCTTCAAGTTTTAGATTTACCAGAAGCTTTAAGTGGCGATGTTGCTAGACCACAA
TAA

Upstream 100 bases:

>100_bases
TATACAAACGTAAATTACGAAAACTATGGCTGATTTTTTAGTAAAAATGGAGCAAAATAGTCAGCAATCATAAAGAAACA
TATTGAATTTGAGATTAATC

Downstream 100 bases:

>100_bases
TTATATTTAATAAATTAAAAGCCCGTGGATAAATCTGCGGGCTTTTCTATAGATACAAAATTCTAATGAATTCATTAAAT
TAGGGCATCAATTTTTTAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 239

Protein sequence:

>240_residues
MSLLAFSSYALNGVDAQKFLQGQVTVDTERLAENETRYTAICDLKGRIHFGLWLKKNNAESFDIIVTQDQAEELAKHIKK
YGAFSKMTLSEQGAVFPKVVNGHTEFSSTETDISEWQKQAIMTGQAWIAQATEHEFQPQELRLHQREGVNYDKGCYLGQE
IVARLWFKAKPKHWLHLVQGTGDAPAPATQLHNDVEVVNSTQTTDGYIALVVAKPAALQELGLQVLDLPEALSGDVARPQ

Sequences:

>Translated_240_residues
MSLLAFSSYALNGVDAQKFLQGQVTVDTERLAENETRYTAICDLKGRIHFGLWLKKNNAESFDIIVTQDQAEELAKHIKK
YGAFSKMTLSEQGAVFPKVVNGHTEFSSTETDISEWQKQAIMTGQAWIAQATEHEFQPQELRLHQREGVNYDKGCYLGQE
IVARLWFKAKPKHWLHLVQGTGDAPAPATQLHNDVEVVNSTQTTDGYIALVVAKPAALQELGLQVLDLPEALSGDVARPQ
>Mature_239_residues
SLLAFSSYALNGVDAQKFLQGQVTVDTERLAENETRYTAICDLKGRIHFGLWLKKNNAESFDIIVTQDQAEELAKHIKKY
GAFSKMTLSEQGAVFPKVVNGHTEFSSTETDISEWQKQAIMTGQAWIAQATEHEFQPQELRLHQREGVNYDKGCYLGQEI
VARLWFKAKPKHWLHLVQGTGDAPAPATQLHNDVEVVNSTQTTDGYIALVVAKPAALQELGLQVLDLPEALSGDVARPQ

Specific function: Unknown

COG id: COG0354

COG function: function code R; Predicted aminomethyltransferase related to GcvT

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ygfZ (UP14) and B.aphidicola (subsp. Acyrthosiphon pisum) BU435 [H]

Homologues:

None

Paralogues:

None

Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017703
- InterPro:   IPR006222 [H]

Pfam domain/function: PF01571 GCV_T [H]

EC number: NA

Molecular weight: Translated: 26721; Mature: 26590

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLAFSSYALNGVDAQKFLQGQVTVDTERLAENETRYTAICDLKGRIHFGLWLKKNNAE
CCEEEECCHHCCCCCHHHHHCCCEEECHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCC
SFDIIVTQDQAEELAKHIKKYGAFSKMTLSEQGAVFPKVVNGHTEFSSTETDISEWQKQA
EEEEEEECHHHHHHHHHHHHHCCHHEEEECCCCCCCHHHHCCCCCCCCCHHHHHHHHHHH
IMTGQAWIAQATEHEFQPQELRLHQREGVNYDKGCYLGQEIVARLWFKAKPKHWLHLVQG
HHCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHEEEEEC
TGDAPAPATQLHNDVEVVNSTQTTDGYIALVVAKPAALQELGLQVLDLPEALSGDVARPQ
CCCCCCCHHHHCCHHHHHCCCCCCCCEEEEEEECCHHHHHHCCCEECCCHHHCCCCCCCC
>Mature Secondary Structure 
SLLAFSSYALNGVDAQKFLQGQVTVDTERLAENETRYTAICDLKGRIHFGLWLKKNNAE
CEEEECCHHCCCCCHHHHHCCCEEECHHHHHCCCCCEEEEEEECCCEEEEEEEECCCCC
SFDIIVTQDQAEELAKHIKKYGAFSKMTLSEQGAVFPKVVNGHTEFSSTETDISEWQKQA
EEEEEEECHHHHHHHHHHHHHCCHHEEEECCCCCCCHHHHCCCCCCCCCHHHHHHHHHHH
IMTGQAWIAQATEHEFQPQELRLHQREGVNYDKGCYLGQEIVARLWFKAKPKHWLHLVQG
HHCCHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHEEEEEC
TGDAPAPATQLHNDVEVVNSTQTTDGYIALVVAKPAALQELGLQVLDLPEALSGDVARPQ
CCCCCCCHHHHCCHHHHHCCCCCCCCEEEEEEECCHHHHHHCCCEECCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]