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The map label for this gene is yvbU [H]

Identifier: 213157690

GI number: 213157690

Start: 3293824

End: 3294708

Strand: Direct

Name: yvbU [H]

Synonym: AB57_3169

Alternate gene names: 213157690

Gene position: 3293824-3294708 (Clockwise)

Preceding gene: 213157685

Following gene: 213157691

Centisome position: 81.32

GC content: 38.98

Gene sequence:

>885_bases
ATGACATTTACCCAGCTTGAAATTTTTGCACTCATTGCTGAACTAAAAAGCTTTACTGCTACAGCAGAAAAGCTGGGAAT
TTCACAGTCGGCAGTTTCCCATGCGCTTAAATCATTAGAACAACAATGGGGCATTAACCTGATTTCAAGAACTCAAAGCG
ATATTGAGCTGACGACGACAGGTCAGCAGTTATTAACCCATGTAAAAGAGCTGTTGAGTATTTCCGATACCTTAGAAAAA
GAAGTGGCTGCCATCCACGGTTTAAATGAAGGCACATTACGTATTGGTTCTTTTGGAGCTTCATCCTCTATTTATCTATT
GCCTGAAATTTTAGAAACCTTTCGGCAACGCTACCCTAAAATCGAAATTTATATCGATGAAGGTGAAGATAAAGAAGTTG
CTCAGTGGTTACTAGAAAGGCGTATAGAGGTTGGTTTTTTGATTATGCCAGATGAGCGATTCGATACATTCCCCTTAATT
GAAGATCGTTTTGTGGCCTTAATTCCGAGTGGTTACCCGCTCGCGCAGCAACTCTATATTGATCCAGCACATCTAGAAAA
CTGCCCTTTTATTATGACAATGGCGGGTAGTAGACATCAGGTCGAATTAATTTTAAAAAACTTTAATGTGAAACCCGACA
TCAAATTTTATGTTTCACAAATTCTAAGTATTGTCAGTATGGTCCATAACCAGTTAGGGATTTCGATTGTCTCTGATATG
GTGCTCACCAAAGAGTTACTCTCACTTTATCCCAACGTGGTTAAACGCCCATTTAAACCGAACCTTAAACGTTCTATTGG
TCTTGCAGTAAAAAATAAGAAACACATCAGTCCAGCCGTAAAAGCATTTATTGAAGTTGCTCAAGAGGTTTGGTCCGATC
ATTAA

Upstream 100 bases:

>100_bases
TGTTGAGGCTTGCTAGTTTGGGAACTACCTTGGCTTACTCATATATTAAAGATAATGAAAACTCATGATAAAATGAGTTT
TTACTCATAATAAGTACAAT

Downstream 100 bases:

>100_bases
TTGAATATAGATAATTTTTAAAAATTTAATAACGATCTCTTTCAGATCAATTTATCAACATATTAGATGACTTGTAACGT
AAAAAGCGCCCTTATTGCCC

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MTFTQLEIFALIAELKSFTATAEKLGISQSAVSHALKSLEQQWGINLISRTQSDIELTTTGQQLLTHVKELLSISDTLEK
EVAAIHGLNEGTLRIGSFGASSSIYLLPEILETFRQRYPKIEIYIDEGEDKEVAQWLLERRIEVGFLIMPDERFDTFPLI
EDRFVALIPSGYPLAQQLYIDPAHLENCPFIMTMAGSRHQVELILKNFNVKPDIKFYVSQILSIVSMVHNQLGISIVSDM
VLTKELLSLYPNVVKRPFKPNLKRSIGLAVKNKKHISPAVKAFIEVAQEVWSDH

Sequences:

>Translated_294_residues
MTFTQLEIFALIAELKSFTATAEKLGISQSAVSHALKSLEQQWGINLISRTQSDIELTTTGQQLLTHVKELLSISDTLEK
EVAAIHGLNEGTLRIGSFGASSSIYLLPEILETFRQRYPKIEIYIDEGEDKEVAQWLLERRIEVGFLIMPDERFDTFPLI
EDRFVALIPSGYPLAQQLYIDPAHLENCPFIMTMAGSRHQVELILKNFNVKPDIKFYVSQILSIVSMVHNQLGISIVSDM
VLTKELLSLYPNVVKRPFKPNLKRSIGLAVKNKKHISPAVKAFIEVAQEVWSDH
>Mature_293_residues
TFTQLEIFALIAELKSFTATAEKLGISQSAVSHALKSLEQQWGINLISRTQSDIELTTTGQQLLTHVKELLSISDTLEKE
VAAIHGLNEGTLRIGSFGASSSIYLLPEILETFRQRYPKIEIYIDEGEDKEVAQWLLERRIEVGFLIMPDERFDTFPLIE
DRFVALIPSGYPLAQQLYIDPAHLENCPFIMTMAGSRHQVELILKNFNVKPDIKFYVSQILSIVSMVHNQLGISIVSDMV
LTKELLSLYPNVVKRPFKPNLKRSIGLAVKNKKHISPAVKAFIEVAQEVWSDH

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=240, Percent_Identity=27.9166666666667, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788748, Length=292, Percent_Identity=26.027397260274, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI1788481, Length=294, Percent_Identity=29.5918367346939, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693105, Length=296, Percent_Identity=22.972972972973, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87082132, Length=285, Percent_Identity=26.3157894736842, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788887, Length=295, Percent_Identity=25.7627118644068, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI157672245, Length=295, Percent_Identity=22.0338983050847, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790399, Length=277, Percent_Identity=25.6317689530686, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786401, Length=262, Percent_Identity=27.4809160305344, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787806, Length=197, Percent_Identity=25.3807106598985, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1787530, Length=232, Percent_Identity=23.2758620689655, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789204, Length=243, Percent_Identity=25.9259259259259, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790208, Length=300, Percent_Identity=23.6666666666667, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788706, Length=130, Percent_Identity=33.8461538461538, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787128, Length=123, Percent_Identity=30.0813008130081, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87081904, Length=152, Percent_Identity=26.9736842105263, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787589, Length=154, Percent_Identity=27.2727272727273, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790262, Length=294, Percent_Identity=26.1904761904762, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788296, Length=248, Percent_Identity=25.4032258064516, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787601, Length=173, Percent_Identity=26.0115606936416, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI48994962, Length=100, Percent_Identity=37, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33235; Mature: 33104

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFTQLEIFALIAELKSFTATAEKLGISQSAVSHALKSLEQQWGINLISRTQSDIELTTT
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEC
GQQLLTHVKELLSISDTLEKEVAAIHGLNEGTLRIGSFGASSSIYLLPEILETFRQRYPK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEHHHHHHHHHHHCCE
IEIYIDEGEDKEVAQWLLERRIEVGFLIMPDERFDTFPLIEDRFVALIPSGYPLAQQLYI
EEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHCCEEEEECCCCCHHHHHCC
DPAHLENCPFIMTMAGSRHQVELILKNFNVKPDIKFYVSQILSIVSMVHNQLGISIVSDM
CHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLTKELLSLYPNVVKRPFKPNLKRSIGLAVKNKKHISPAVKAFIEVAQEVWSDH
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TFTQLEIFALIAELKSFTATAEKLGISQSAVSHALKSLEQQWGINLISRTQSDIELTTT
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEC
GQQLLTHVKELLSISDTLEKEVAAIHGLNEGTLRIGSFGASSSIYLLPEILETFRQRYPK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEHHHHHHHHHHHCCE
IEIYIDEGEDKEVAQWLLERRIEVGFLIMPDERFDTFPLIEDRFVALIPSGYPLAQQLYI
EEEEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCHHCCEEEEECCCCCHHHHHCC
DPAHLENCPFIMTMAGSRHQVELILKNFNVKPDIKFYVSQILSIVSMVHNQLGISIVSDM
CHHHHCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLTKELLSLYPNVVKRPFKPNLKRSIGLAVKNKKHISPAVKAFIEVAQEVWSDH
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]