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The map label for this gene is rraA [C]

Identifier: 213157161

GI number: 213157161

Start: 1930871

End: 1931377

Strand: Direct

Name: rraA [C]

Synonym: AB57_1844

Alternate gene names: 213157161

Gene position: 1930871-1931377 (Clockwise)

Preceding gene: 213157160

Following gene: 213157162

Centisome position: 47.67

GC content: 40.24

Gene sequence:

>507_bases
GTGTCGACAGTACCATTTGTGACATGTGATTTATTAGATGACAATCCGGAAAAAGATTTGCAAGTGGTCACGCCATCAAT
GGACGGTAAGTTCTTTAAAAGCTATGGCGCACGTCAGACTTTTGGCGGACAAGTTGTGACTGTAAAGTGTTTTGAAGATA
ACTCGCGTGTAAAAGAGTTATTGGCTACAGATGGTACAGGGAAGGTATTGGTTGTGGATGGTGGTGCTTCAATGCGCTGT
GCACTTATGGGAGATATGATTGCTGAATCGGCAGTTAAAAATAACTGGAATGGTGTGGTTATTTATGGCTGTGTACGTGA
TGTTGATGCACTTGCAACCTTAGATTTAGGTGTACATGCATTGGCTGCAATTCCGCAAAAAAGTAACCGTAAGGGCATTG
GTGAAGTAGATATTCCTTTGTATTTTGGTGGAGTCACAATTCAATCTGGTGATTTTATCTATGCAGATAATAATGGAATT
GTGATTGCTAAAGAAAAACTAGTCTAG

Upstream 100 bases:

>100_bases
ATTGGCTCATACCATGGTCGTAGCGGCACTAACGCAAATTGAAGCTTTTAAACGATATGATAATCTCAGCATACAACAAA
CTCGATAAGGGAGAATAAAA

Downstream 100 bases:

>100_bases
CTCCACAATTAAATAAAGGAATGCATAATGGTGAATCATCAAATTAAAGTACTGCAAGCATTAGTGTCTGCAATTGCCGA
AGGTGGTAGAGGTGTTACAG

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MSTVPFVTCDLLDDNPEKDLQVVTPSMDGKFFKSYGARQTFGGQVVTVKCFEDNSRVKELLATDGTGKVLVVDGGASMRC
ALMGDMIAESAVKNNWNGVVIYGCVRDVDALATLDLGVHALAAIPQKSNRKGIGEVDIPLYFGGVTIQSGDFIYADNNGI
VIAKEKLV

Sequences:

>Translated_168_residues
MSTVPFVTCDLLDDNPEKDLQVVTPSMDGKFFKSYGARQTFGGQVVTVKCFEDNSRVKELLATDGTGKVLVVDGGASMRC
ALMGDMIAESAVKNNWNGVVIYGCVRDVDALATLDLGVHALAAIPQKSNRKGIGEVDIPLYFGGVTIQSGDFIYADNNGI
VIAKEKLV
>Mature_167_residues
STVPFVTCDLLDDNPEKDLQVVTPSMDGKFFKSYGARQTFGGQVVTVKCFEDNSRVKELLATDGTGKVLVVDGGASMRCA
LMGDMIAESAVKNNWNGVVIYGCVRDVDALATLDLGVHALAAIPQKSNRKGIGEVDIPLYFGGVTIQSGDFIYADNNGIV
IAKEKLV

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=159, Percent_Identity=49.685534591195, Blast_Score=157, Evalue=5e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17953; Mature: 17822

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTVPFVTCDLLDDNPEKDLQVVTPSMDGKFFKSYGARQTFGGQVVTVKCFEDNSRVKEL
CCCCCEEEEEECCCCCCCCEEEEECCCCCHHHHHCCCCCCCCCEEEEEEEECCCHHHHHH
LATDGTGKVLVVDGGASMRCALMGDMIAESAVKNNWNGVVIYGCVRDVDALATLDLGVHA
HHCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCHHE
LAAIPQKSNRKGIGEVDIPLYFGGVTIQSGDFIYADNNGIVIAKEKLV
EHCCCCCCCCCCCCEEECEEEECCEEEECCCEEEECCCCEEEEEECCC
>Mature Secondary Structure 
STVPFVTCDLLDDNPEKDLQVVTPSMDGKFFKSYGARQTFGGQVVTVKCFEDNSRVKEL
CCCCEEEEEECCCCCCCCEEEEECCCCCHHHHHCCCCCCCCCEEEEEEEECCCHHHHHH
LATDGTGKVLVVDGGASMRCALMGDMIAESAVKNNWNGVVIYGCVRDVDALATLDLGVHA
HHCCCCCEEEEEECCCCEEEEHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCHHE
LAAIPQKSNRKGIGEVDIPLYFGGVTIQSGDFIYADNNGIVIAKEKLV
EHCCCCCCCCCCCCEEECEEEECCEEEECCCEEEECCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA