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The map label for this gene is ydfH [C]

Identifier: 213157002

GI number: 213157002

Start: 1768889

End: 1769626

Strand: Direct

Name: ydfH [C]

Synonym: AB57_1680

Alternate gene names: 213157002

Gene position: 1768889-1769626 (Clockwise)

Preceding gene: 213156999

Following gene: 213157004

Centisome position: 43.67

GC content: 37.8

Gene sequence:

>738_bases
ATGTCATCGAATGCACCAAAAAAAACCGTAGAAATGAGCAATGATGAAATTGATGACCATATATATAACGCTATTGTAGA
TGCTATTTTAAATCGACAACTTGCCCCTGGCGCACGTTTAGTTGAAGCACCCTTATGTGAAGCATTTGGTGTAACGCGAG
GAGTGTTAAGACGTGTTTTCGTCAAACTTGCACATGATAAGGTCATCGAAATTCAGCCCAATCGTGGGGCACTCATCGCA
AAACATAGTGCAAATGAAACAAAAGAAGTCTTTGAAGCACGCAGCATGCTGGAAATCGCCACTGTAAAAAAACTAGCACA
AAAGTCTCATCACCTAGATTTTAGTGAGCTTCGGACTTTGGTAGAACAAGAGTCGGATGAGCGTTTAGCTGGAAATTGGG
CCGAGTGGATTAAGCTATCAGGTCAATTTCATTTAAAGCTGATTGAAGCTAATCAAAATTCGATCATGACCAGTTATTTG
CAGACACTTATTGCGAGGACTTCGTTATTAATTGGCTTATATGAAATTCCAAAACATAATAATTGTTCGGCAGATGAACA
CCGTGCAATTTTAGATGCCATTGAACAAGGCGATGAAAAACGAGCAACGCAATTGATGGAAGAACATTTAGAACACTACG
CAACCACATTTATTGAAGAAAACAGTACAGTATCTGCCGAGCAAAATTTATTAAATTTATTTAAAAATAAGAGAATTGAA
ACACCTCAAACTAATTAA

Upstream 100 bases:

>100_bases
AAAATGAGAGAAATATTTCCAAACGCTTAAGTTAAACTTACACTATTCAAAATAGATGAAGTTCTAAAAAGAGGAGACAT
TAATAAAAATGGAGAAATCA

Downstream 100 bases:

>100_bases
AAATCATGGGCCCACTCTTATGGAAAAGGCCCAGATTGGTTATTTTATGGGAATGATTTGATGTGTTAAAAAATCAATAA
ATAGTTTTACTTTCTTCGAT

Product: transcriptional regulator, GntR family

Products: NA

Alternate protein names: Transcriptional Regulator GntR Family; Transcriptional Regulator; GntR-Family Transcriptional Regulator; Transcriptional Regulator GntR Family Protein; Transcriptional Regulator Protein GntR Family; Transcriptional Regulator Gntr Family; GntR Family Regulatory Protein; Transcription Regulator Protein; FCD Domain Protein; Transcriptional Regulator Protein; GntR Family Transcription Regulator Protein; GntR Domain-Containing Protein; Transcriptional Regulator GntR; GntR Family Regulatory; GntR-Family Regulatory Protein; Transcriptional Regulatory Protein GntR Family; Transcription Regulator HTH GntR; Regulatory Protein; Bacterial Regulatory Protein; GntR Family Transcription Regulator; Transcriptional Regulator MdcY Family Protein; GntR-Type Regulator; TRANSCRIPTIONal REGULATOR GntR Family

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MSSNAPKKTVEMSNDEIDDHIYNAIVDAILNRQLAPGARLVEAPLCEAFGVTRGVLRRVFVKLAHDKVIEIQPNRGALIA
KHSANETKEVFEARSMLEIATVKKLAQKSHHLDFSELRTLVEQESDERLAGNWAEWIKLSGQFHLKLIEANQNSIMTSYL
QTLIARTSLLIGLYEIPKHNNCSADEHRAILDAIEQGDEKRATQLMEEHLEHYATTFIEENSTVSAEQNLLNLFKNKRIE
TPQTN

Sequences:

>Translated_245_residues
MSSNAPKKTVEMSNDEIDDHIYNAIVDAILNRQLAPGARLVEAPLCEAFGVTRGVLRRVFVKLAHDKVIEIQPNRGALIA
KHSANETKEVFEARSMLEIATVKKLAQKSHHLDFSELRTLVEQESDERLAGNWAEWIKLSGQFHLKLIEANQNSIMTSYL
QTLIARTSLLIGLYEIPKHNNCSADEHRAILDAIEQGDEKRATQLMEEHLEHYATTFIEENSTVSAEQNLLNLFKNKRIE
TPQTN
>Mature_244_residues
SSNAPKKTVEMSNDEIDDHIYNAIVDAILNRQLAPGARLVEAPLCEAFGVTRGVLRRVFVKLAHDKVIEIQPNRGALIAK
HSANETKEVFEARSMLEIATVKKLAQKSHHLDFSELRTLVEQESDERLAGNWAEWIKLSGQFHLKLIEANQNSIMTSYLQ
TLIARTSLLIGLYEIPKHNNCSADEHRAILDAIEQGDEKRATQLMEEHLEHYATTFIEENSTVSAEQNLLNLFKNKRIET
PQTN

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27752; Mature: 27621

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNAPKKTVEMSNDEIDDHIYNAIVDAILNRQLAPGARLVEAPLCEAFGVTRGVLRRVF
CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VKLAHDKVIEIQPNRGALIAKHSANETKEVFEARSMLEIATVKKLAQKSHHLDFSELRTL
HHHHCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VEQESDERLAGNWAEWIKLSGQFHLKLIEANQNSIMTSYLQTLIARTSLLIGLYEIPKHN
HHCCCCHHHHCCHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NCSADEHRAILDAIEQGDEKRATQLMEEHLEHYATTFIEENSTVSAEQNLLNLFKNKRIE
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
TPQTN
CCCCC
>Mature Secondary Structure 
SSNAPKKTVEMSNDEIDDHIYNAIVDAILNRQLAPGARLVEAPLCEAFGVTRGVLRRVF
CCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
VKLAHDKVIEIQPNRGALIAKHSANETKEVFEARSMLEIATVKKLAQKSHHLDFSELRTL
HHHHCCCEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VEQESDERLAGNWAEWIKLSGQFHLKLIEANQNSIMTSYLQTLIARTSLLIGLYEIPKHN
HHCCCCHHHHCCHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
NCSADEHRAILDAIEQGDEKRATQLMEEHLEHYATTFIEENSTVSAEQNLLNLFKNKRIE
CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC
TPQTN
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA