Click here to switch to the map view.

The map label for this gene is yhjC [H]

Identifier: 213156968

GI number: 213156968

Start: 1733058

End: 1733978

Strand: Direct

Name: yhjC [H]

Synonym: AB57_1643

Alternate gene names: 213156968

Gene position: 1733058-1733978 (Clockwise)

Preceding gene: 213156962

Following gene: 213156972

Centisome position: 42.79

GC content: 42.35

Gene sequence:

>921_bases
ATGGATAAATTTGATACCTTGCAACTTTTTACCCGCATCGTAGAGCTGGGTAGTTTTAGTCAGGCAGCCGATCAGCTAAA
TATCCCACGTGCTACAGCAAGTAATGCCATTAAAGAGTTAGAGAGTAATTTACAGTGCCGTTTACTAGAGCGAACGACTC
GGCATGTAAGGCCATCACTAGATGGACAGGCATTTTATGAACGCTGCACACAAATATTATCGGAACTTGATGATGCCGAA
TCATCTTTACGGAATGTAATTGCTCAGCCCCGTGGTTTATTACGTGTCGATTTATCAGGCGCACATGCAACTAAAATTGT
TTTACCCAATATCGATCAATTTCATCAACTGTATCCCGACATTGAACTGGTAATCAGTACGGGGGATCGCTTGGTTGATC
TGATTAGGGAAGGCATAGACTGCGTGGTGAGAGCGGGACGTTTGGATGATTCCACTTTAATTGCTAGACATTTGATCGAT
ATGCCGCAAGTGATTTGTGCAAGTCCTGACTATTTAAATAAACATGGAACGCCAGAGCAACCAGAAGATTTATTATCACA
TTATTGTGTCAATTTCTTTTCGACATCAGGCGGACGGAATTATCCATTTGAATTGATGGTGAATGGCAAAAAACAAGATT
TTTTTTTGAAAAGCTGGATCGCGGTAAATGACGCTGAAAACTATGTATTATCTGCCTTACAAGGGGCTGGCTTAATTCAA
GTACCGCGCTACCATGTGGCAAATGAATTAAAAAATGGGCGTCTGGTTCAGGTTTTATCTGAGTGGGAAATCCCGAAGAT
GTCAGTTTCTGCATTATATCCGCAGCATCGGCAGCTCTCGCCACGCGTACGAGTTTTTGTCGCTTGGCTGAGTGAGTTAT
ACACGGGCTATTTTGCCAACTTTGAATACCCGCAAAAATGA

Upstream 100 bases:

>100_bases
ATGGCTTATTTTAATAATATAGAAATATGGGATAAATCATCAAAATTGGATAAGATAATTCCATATAAATTAATAATAGG
TAGGGTTAAAAGCGAGCACC

Downstream 100 bases:

>100_bases
AATATCTTGCGGGTAAGTCAAAAACTAAATGATATTTTTAAGACTGATTCTGCAATTTATCTTGAGTCTTGGTCTCAAAA
TCACTCGCATCATGGCGTTC

Product: transcriptional regulator, LysR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MDKFDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSLDGQAFYERCTQILSELDDAE
SSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHQLYPDIELVISTGDRLVDLIREGIDCVVRAGRLDDSTLIARHLID
MPQVICASPDYLNKHGTPEQPEDLLSHYCVNFFSTSGGRNYPFELMVNGKKQDFFLKSWIAVNDAENYVLSALQGAGLIQ
VPRYHVANELKNGRLVQVLSEWEIPKMSVSALYPQHRQLSPRVRVFVAWLSELYTGYFANFEYPQK

Sequences:

>Translated_306_residues
MDKFDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSLDGQAFYERCTQILSELDDAE
SSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHQLYPDIELVISTGDRLVDLIREGIDCVVRAGRLDDSTLIARHLID
MPQVICASPDYLNKHGTPEQPEDLLSHYCVNFFSTSGGRNYPFELMVNGKKQDFFLKSWIAVNDAENYVLSALQGAGLIQ
VPRYHVANELKNGRLVQVLSEWEIPKMSVSALYPQHRQLSPRVRVFVAWLSELYTGYFANFEYPQK
>Mature_306_residues
MDKFDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSLDGQAFYERCTQILSELDDAE
SSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHQLYPDIELVISTGDRLVDLIREGIDCVVRAGRLDDSTLIARHLID
MPQVICASPDYLNKHGTPEQPEDLLSHYCVNFFSTSGGRNYPFELMVNGKKQDFFLKSWIAVNDAENYVLSALQGAGLIQ
VPRYHVANELKNGRLVQVLSEWEIPKMSVSALYPQHRQLSPRVRVFVAWLSELYTGYFANFEYPQK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=298, Percent_Identity=38.5906040268456, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI1786401, Length=289, Percent_Identity=33.9100346020761, Blast_Score=177, Evalue=7e-46,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=31.864406779661, Blast_Score=158, Evalue=5e-40,
Organism=Escherichia coli, GI87081978, Length=301, Percent_Identity=30.2325581395349, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1787128, Length=275, Percent_Identity=29.4545454545455, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI1787589, Length=273, Percent_Identity=27.4725274725275, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1789440, Length=293, Percent_Identity=28.3276450511945, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1787601, Length=148, Percent_Identity=30.4054054054054, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI145693105, Length=200, Percent_Identity=22.5, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788297, Length=119, Percent_Identity=31.0924369747899, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786448, Length=300, Percent_Identity=24.3333333333333, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788706, Length=286, Percent_Identity=22.7272727272727, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34738; Mature: 34738

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKFDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSL
CCCHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
DGQAFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHQLYPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCHHHHHHHCCC
IELVISTGDRLVDLIREGIDCVVRAGRLDDSTLIARHLIDMPQVICASPDYLNKHGTPEQ
CEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHCCCHHHCCCCCCCC
PEDLLSHYCVNFFSTSGGRNYPFELMVNGKKQDFFLKSWIAVNDAENYVLSALQGAGLIQ
HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHEECCHHHHHHHHHCCCCEEE
VPRYHVANELKNGRLVQVLSEWEIPKMSVSALYPQHRQLSPRVRVFVAWLSELYTGYFAN
CCHHHHHHHHCCCCEEEHHHHCCCCCCHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHCC
FEYPQK
CCCCCC
>Mature Secondary Structure
MDKFDTLQLFTRIVELGSFSQAADQLNIPRATASNAIKELESNLQCRLLERTTRHVRPSL
CCCHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
DGQAFYERCTQILSELDDAESSLRNVIAQPRGLLRVDLSGAHATKIVLPNIDQFHQLYPD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCHHHHHHHCCC
IELVISTGDRLVDLIREGIDCVVRAGRLDDSTLIARHLIDMPQVICASPDYLNKHGTPEQ
CEEEEECCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHCCCHHHCCCCCCCC
PEDLLSHYCVNFFSTSGGRNYPFELMVNGKKQDFFLKSWIAVNDAENYVLSALQGAGLIQ
HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHEECCHHHHHHHHHCCCCEEE
VPRYHVANELKNGRLVQVLSEWEIPKMSVSALYPQHRQLSPRVRVFVAWLSELYTGYFAN
CCHHHHHHHHCCCCEEEHHHHCCCCCCHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHCC
FEYPQK
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]