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The map label for this gene is yggB [C]

Identifier: 212225091

GI number: 212225091

Start: 1820723

End: 1821805

Strand: Reverse

Name: yggB [C]

Synonym: TON_1939

Alternate gene names: 212225091

Gene position: 1821805-1820723 (Counterclockwise)

Preceding gene: 212225092

Following gene: 212225085

Centisome position: 98.6

GC content: 50.05

Gene sequence:

>1083_bases
ATGGCTAACGTGACGGGCAACACGACCACAAATTCACCGAGAGGCGTGGGAAGTCTGATACCTATTGAGATAAGTCTCTG
GACGGGCATTGAGGCGATTCTCATCGTAATAGGCATGATAATTCTCGGGAGAATTCTGAGAAAGCTCATAATTCGAAAGT
CAAAGGAAACCACTCTCACCTGGATAATCAACGAGGACACCGCTGATATAGTGTTCCGCATGTTCGTGCTCGGAGGCATG
ATATGGGCGCTCTACGTGATAGGCGTGATGAACTACCAGATAGGATCCACCAGCGTTGGAAACATCGCCTTCGCGGTCGG
CTTCTTCTACTTTGCATACCTCATCGCCAAAAAATCCAAGGACTACCTCATAATGAGCGCGGGCAAGAAACCTTCCTCCG
ACGTTCAGGTAAAGGCGAAGATATTCTACTACACTTTCATCACCATAGCTTTCTTTCTGGCTCTCAGCTTTGCCGGAATA
AGTGCTGAGCTGAGCGCCCTTCTGGCAGCGGCAGGAATAACTGGTATCATCCTCGGTTTCTCGGCACAAACCGTCGTTGC
AAACTTCATCTCAGGAATCTTCATGTACTTCGACAAGCCACTCAACATAGGTGACCAAGTGAAAATAGGTGAACTCGAGG
GCATTGTCGAGGACATAAGGATACTTTCAACGAGAATTCGCGCCTGGGACGGAACGCTCATCAGGATTCCGAACGAGAAG
CTCTTCAACAGCAATATCATCAACCTTCAGAGATATCCGGCGAGAAGGGTAGAGATTGAGATCGGCATAGCCTACAGTGC
CGATACTGAGAAGGCTATCGAGGTTATAAAAAAGACTCTCAATGAGATGCCCCTCGTTTTAGCCGAGCCAGGGCCGGTCG
TGTTCGTAAAGGAACTTGGGGACAGCGCGGTGGTGCTTTCAATCAGAGCCTGGGCGCCGAGCGAGAGATGGTTCGACGTC
AGGACTGAGGCCGTATCCAGAATCAAGAAGGCTCTGGACGAGGCGGGAATAGAGATACCGTTCCCGCAGAGAGTGAACTG
GTTCGCCAACGAGCTGAGAGTAAAGGTAGATAAGGAGTCCTAA

Upstream 100 bases:

>100_bases
AGCCCTACGAGGTCAATAACACCGGCAACCCGCCCGATGGGACGCTCAAGGCCACCCATAAAGCAGAACCTCTACCGAAC
TTCAAGATGAGGTGGTGACG

Downstream 100 bases:

>100_bases
TCCCCTTTCTTTTCTATCAGCGCGTAGAAGAAGCCTATCGTCCTATGCCTGTGAGGCCACGCCCTCATCGTTCCGGACAG
AAATCCTCCATCGTAAGGGC

Product: small-conductance mechanosensitive channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 359

Protein sequence:

>360_residues
MANVTGNTTTNSPRGVGSLIPIEISLWTGIEAILIVIGMIILGRILRKLIIRKSKETTLTWIINEDTADIVFRMFVLGGM
IWALYVIGVMNYQIGSTSVGNIAFAVGFFYFAYLIAKKSKDYLIMSAGKKPSSDVQVKAKIFYYTFITIAFFLALSFAGI
SAELSALLAAAGITGIILGFSAQTVVANFISGIFMYFDKPLNIGDQVKIGELEGIVEDIRILSTRIRAWDGTLIRIPNEK
LFNSNIINLQRYPARRVEIEIGIAYSADTEKAIEVIKKTLNEMPLVLAEPGPVVFVKELGDSAVVLSIRAWAPSERWFDV
RTEAVSRIKKALDEAGIEIPFPQRVNWFANELRVKVDKES

Sequences:

>Translated_360_residues
MANVTGNTTTNSPRGVGSLIPIEISLWTGIEAILIVIGMIILGRILRKLIIRKSKETTLTWIINEDTADIVFRMFVLGGM
IWALYVIGVMNYQIGSTSVGNIAFAVGFFYFAYLIAKKSKDYLIMSAGKKPSSDVQVKAKIFYYTFITIAFFLALSFAGI
SAELSALLAAAGITGIILGFSAQTVVANFISGIFMYFDKPLNIGDQVKIGELEGIVEDIRILSTRIRAWDGTLIRIPNEK
LFNSNIINLQRYPARRVEIEIGIAYSADTEKAIEVIKKTLNEMPLVLAEPGPVVFVKELGDSAVVLSIRAWAPSERWFDV
RTEAVSRIKKALDEAGIEIPFPQRVNWFANELRVKVDKES
>Mature_359_residues
ANVTGNTTTNSPRGVGSLIPIEISLWTGIEAILIVIGMIILGRILRKLIIRKSKETTLTWIINEDTADIVFRMFVLGGMI
WALYVIGVMNYQIGSTSVGNIAFAVGFFYFAYLIAKKSKDYLIMSAGKKPSSDVQVKAKIFYYTFITIAFFLALSFAGIS
AELSALLAAAGITGIILGFSAQTVVANFISGIFMYFDKPLNIGDQVKIGELEGIVEDIRILSTRIRAWDGTLIRIPNEKL
FNSNIINLQRYPARRVEIEIGIAYSADTEKAIEVIKKTLNEMPLVLAEPGPVVFVKELGDSAVVLSIRAWAPSERWFDVR
TEAVSRIKKALDEAGIEIPFPQRVNWFANELRVKVDKES

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=212, Percent_Identity=32.0754716981132, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1786670, Length=310, Percent_Identity=28.3870967741935, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI2367355, Length=205, Percent_Identity=31.7073170731707, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787591, Length=225, Percent_Identity=24.4444444444444, Blast_Score=86, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 39900; Mature: 39769

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS01246 UPF0003

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANVTGNTTTNSPRGVGSLIPIEISLWTGIEAILIVIGMIILGRILRKLIIRKSKETTLT
CCCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
WIINEDTADIVFRMFVLGGMIWALYVIGVMNYQIGSTSVGNIAFAVGFFYFAYLIAKKSK
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
DYLIMSAGKKPSSDVQVKAKIFYYTFITIAFFLALSFAGISAELSALLAAAGITGIILGF
CEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHEEECC
SAQTVVANFISGIFMYFDKPLNIGDQVKIGELEGIVEDIRILSTRIRAWDGTLIRIPNEK
CHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCCHH
LFNSNIINLQRYPARRVEIEIGIAYSADTEKAIEVIKKTLNEMPLVLAEPGPVVFVKELG
HCCCCCEEEECCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHCCEEEECCCCEEEEEECC
DSAVVLSIRAWAPSERWFDVRTEAVSRIKKALDEAGIEIPFPQRVNWFANELRVKVDKES
CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEEECCC
>Mature Secondary Structure 
ANVTGNTTTNSPRGVGSLIPIEISLWTGIEAILIVIGMIILGRILRKLIIRKSKETTLT
CCCCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEE
WIINEDTADIVFRMFVLGGMIWALYVIGVMNYQIGSTSVGNIAFAVGFFYFAYLIAKKSK
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCC
DYLIMSAGKKPSSDVQVKAKIFYYTFITIAFFLALSFAGISAELSALLAAAGITGIILGF
CEEEEECCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHEEECC
SAQTVVANFISGIFMYFDKPLNIGDQVKIGELEGIVEDIRILSTRIRAWDGTLIRIPNEK
CHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCEEEECCCHH
LFNSNIINLQRYPARRVEIEIGIAYSADTEKAIEVIKKTLNEMPLVLAEPGPVVFVKELG
HCCCCCEEEECCCCEEEEEEEEEEECCCHHHHHHHHHHHHHHCCEEEECCCCEEEEEECC
DSAVVLSIRAWAPSERWFDVRTEAVSRIKKALDEAGIEIPFPQRVNWFANELRVKVDKES
CCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]