Click here to switch to the map view.

The map label for this gene is nagD [H]

Identifier: 212224969

GI number: 212224969

Start: 1692847

End: 1693653

Strand: Reverse

Name: nagD [H]

Synonym: TON_1818

Alternate gene names: 212224969

Gene position: 1693653-1692847 (Counterclockwise)

Preceding gene: 212224971

Following gene: 212224968

Centisome position: 91.67

GC content: 54.28

Gene sequence:

>807_bases
ATGATCGGACTCATCTTCGACATGGACGGCGTGATATACCGGGGCAATAAGCCCATAGATGGCACGCGAGAGGTAGTAAA
CTTCCTGAAAGAAAGGGACATCCCCTTCGCCTTCCTCACCAACAACTCCACCAGGAATGCCCAGATGTACCGCGAGAAGC
TCCTCAGGATGGGAATAGACGTTGAAGAAGAGCGTATCATCACCTCCGGCTACGCCACCGCCAGGTACCTCCAGACCCAC
TTTAAGGAAGGCCCCATCTTTGTCATTGGCGGGAAAGGACTCCAAGAGGAAGTAGTGAGGATGGGCTGGCCCGTGATGGG
CCTCGAGGAAGCAAGGGAAAGGTGGAGGGATATCAAATACGTCGTGGTCGGCCTCGACCCTGAGTTAACCTACGAGAAGC
TGAAGTACGGAACGCTGGCAATAAGGAACGGAGCGAAGTTCATAGGAACCAATCCGGACACAACGTATCCCTCCGAGGAA
GGTCTTTATCCAGGAGCGGGGTCGATTATAGCGGCGCTGAAGGCATCGACAGATGCTGATCCCCTCATAATAGGCAAGCC
CAACGAACCCGCTTACGAGGTCGTCAGGGAGAAGCTCGGTGACGTCGACGAGATATGGATGGTGGGCGACAGGCTCGACA
CGGACATAGCCTTCGCCAGGAGATTTGGCATGAAGGCAATAATGGTCCTGACAGGCGTCAGCACGCTGAAAGACGTTGAG
AAGAGCGAGGTAAAACCCGACCTAATCCTCCCGAGCATTAAGGAGCTGCTCGAATACCTGAAGGTTAAGCTGGAGGCTTC
AGAATGA

Upstream 100 bases:

>100_bases
AGATTCACACTCCCCAACGTAAAAGAAATGAGAATATATAAATTTTTTGAAGGCCAAAATACTTTTTAGGTCTTCACTAT
CTCAAGTGTAGGTGTCCATA

Downstream 100 bases:

>100_bases
ACCTTCGTGAGCTGCTCGAAAGACTCATCTGGCAGGAGAACGAGCTCTACAACCTGTACAAGCTCGGCGAAACGTTCGCC
ACCTACGAAAGGCCCGAGTT

Product: sugar phosphatase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MIGLIFDMDGVIYRGNKPIDGTREVVNFLKERDIPFAFLTNNSTRNAQMYREKLLRMGIDVEEERIITSGYATARYLQTH
FKEGPIFVIGGKGLQEEVVRMGWPVMGLEEARERWRDIKYVVVGLDPELTYEKLKYGTLAIRNGAKFIGTNPDTTYPSEE
GLYPGAGSIIAALKASTDADPLIIGKPNEPAYEVVREKLGDVDEIWMVGDRLDTDIAFARRFGMKAIMVLTGVSTLKDVE
KSEVKPDLILPSIKELLEYLKVKLEASE

Sequences:

>Translated_268_residues
MIGLIFDMDGVIYRGNKPIDGTREVVNFLKERDIPFAFLTNNSTRNAQMYREKLLRMGIDVEEERIITSGYATARYLQTH
FKEGPIFVIGGKGLQEEVVRMGWPVMGLEEARERWRDIKYVVVGLDPELTYEKLKYGTLAIRNGAKFIGTNPDTTYPSEE
GLYPGAGSIIAALKASTDADPLIIGKPNEPAYEVVREKLGDVDEIWMVGDRLDTDIAFARRFGMKAIMVLTGVSTLKDVE
KSEVKPDLILPSIKELLEYLKVKLEASE
>Mature_268_residues
MIGLIFDMDGVIYRGNKPIDGTREVVNFLKERDIPFAFLTNNSTRNAQMYREKLLRMGIDVEEERIITSGYATARYLQTH
FKEGPIFVIGGKGLQEEVVRMGWPVMGLEEARERWRDIKYVVVGLDPELTYEKLKYGTLAIRNGAKFIGTNPDTTYPSEE
GLYPGAGSIIAALKASTDADPLIIGKPNEPAYEVVREKLGDVDEIWMVGDRLDTDIAFARRFGMKAIMVLTGVSTLKDVE
KSEVKPDLILPSIKELLEYLKVKLEASE

Specific function: Unknown

COG id: COG0647

COG function: function code G; Predicted sugar phosphatases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. NagD family [H]

Homologues:

Organism=Homo sapiens, GI108796653, Length=290, Percent_Identity=32.7586206896552, Blast_Score=135, Evalue=3e-32,
Organism=Homo sapiens, GI10092677, Length=275, Percent_Identity=29.8181818181818, Blast_Score=125, Evalue=4e-29,
Organism=Homo sapiens, GI14149777, Length=260, Percent_Identity=25.7692307692308, Blast_Score=84, Evalue=1e-16,
Organism=Escherichia coli, GI1786890, Length=255, Percent_Identity=29.0196078431373, Blast_Score=122, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17562458, Length=283, Percent_Identity=28.9752650176678, Blast_Score=127, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI17560956, Length=283, Percent_Identity=28.9752650176678, Blast_Score=127, Evalue=8e-30,
Organism=Caenorhabditis elegans, GI17558880, Length=283, Percent_Identity=28.9752650176678, Blast_Score=126, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI193210059, Length=269, Percent_Identity=28.996282527881, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI86563050, Length=264, Percent_Identity=28.4090909090909, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71984613, Length=265, Percent_Identity=26.7924528301887, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17562356, Length=236, Percent_Identity=26.6949152542373, Blast_Score=77, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6319965, Length=236, Percent_Identity=34.3220338983051, Blast_Score=143, Evalue=2e-35,
Organism=Drosophila melanogaster, GI24666141, Length=278, Percent_Identity=30.9352517985612, Blast_Score=133, Evalue=1e-31,
Organism=Drosophila melanogaster, GI24656326, Length=281, Percent_Identity=30.9608540925267, Blast_Score=130, Evalue=9e-31,
Organism=Drosophila melanogaster, GI24666137, Length=289, Percent_Identity=29.4117647058824, Blast_Score=97, Evalue=9e-21,
Organism=Drosophila melanogaster, GI24656330, Length=285, Percent_Identity=24.2105263157895, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24641437, Length=239, Percent_Identity=25.1046025104602, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI19920940, Length=261, Percent_Identity=26.4367816091954, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI22026920, Length=283, Percent_Identity=24.0282685512367, Blast_Score=79, Evalue=4e-15,
Organism=Drosophila melanogaster, GI18859765, Length=245, Percent_Identity=23.6734693877551, Blast_Score=74, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006357
- InterPro:   IPR006354
- InterPro:   IPR023215 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 30157; Mature: 30157

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIGLIFDMDGVIYRGNKPIDGTREVVNFLKERDIPFAFLTNNSTRNAQMYREKLLRMGID
CEEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCC
VEEERIITSGYATARYLQTHFKEGPIFVIGGKGLQEEVVRMGWPVMGLEEARERWRDIKY
CCHHEEECCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHCCEEE
VVVGLDPELTYEKLKYGTLAIRNGAKFIGTNPDTTYPSEEGLYPGAGSIIAALKASTDAD
EEEECCCCCHHHHHHCCEEEEECCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
PLIIGKPNEPAYEVVREKLGDVDEIWMVGDRLDTDIAFARRFGMKAIMVLTGVSTLKDVE
CEEEECCCCHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHCCHHHHHHHCHHHHHHHH
KSEVKPDLILPSIKELLEYLKVKLEASE
HHHCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIGLIFDMDGVIYRGNKPIDGTREVVNFLKERDIPFAFLTNNSTRNAQMYREKLLRMGID
CEEEEEECCCEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCC
VEEERIITSGYATARYLQTHFKEGPIFVIGGKGLQEEVVRMGWPVMGLEEARERWRDIKY
CCHHEEECCCHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCCCHHHHHHHHCCEEE
VVVGLDPELTYEKLKYGTLAIRNGAKFIGTNPDTTYPSEEGLYPGAGSIIAALKASTDAD
EEEECCCCCHHHHHHCCEEEEECCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC
PLIIGKPNEPAYEVVREKLGDVDEIWMVGDRLDTDIAFARRFGMKAIMVLTGVSTLKDVE
CEEEECCCCHHHHHHHHHHCCHHHEEEECCCCCHHHHHHHHHCCHHHHHHHCHHHHHHHH
KSEVKPDLILPSIKELLEYLKVKLEASE
HHHCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA