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The map label for this gene is ydcR [C]

Identifier: 212224445

GI number: 212224445

Start: 1175757

End: 1177013

Strand: Reverse

Name: ydcR [C]

Synonym: TON_1295

Alternate gene names: 212224445

Gene position: 1177013-1175757 (Counterclockwise)

Preceding gene: 212224447

Following gene: 212224443

Centisome position: 63.7

GC content: 53.86

Gene sequence:

>1257_bases
GTGGGGGAAAAACTCATGCGGAAGCTGAGTTCTGGTTCACTGGATTTTGAGGTATACTTCTCTGACAAGGCTCAGGAAAT
GAAGGCCTCAGAGATTAGAGAGCTCCTCAAGCTCGTCGAGACATCAGACGTTATCTCGCTCGCCGGCGGCCTTCCCGCCC
CGGAGACATTCCCCGTGGAGACAATCAAGAAGATAACCGCCGAGATACTTAACACTCATGCAGACAAGGCACTCCAGTAC
GGAACGACGAAGGGCTTCACACCGCTCCGCCTTGCTCTCGCGGACTGGATGGAAAAGCGCTACGGTATTCCGACGAGCAA
AGTCGAGATAATGATGGTCGCTGGAAGCCAGCAGGCCCTTGACATCATTGGAAGGGTCTTCATAAACCCTGGAGACATAG
TCGTTGTTGAGGGTCCGACCTATCTGGCTGCGCTTAACGCCTTCAAGTACTACGAGCCTGAATTCGTCTCAATTCCCATG
GACGACAACGGTATGATGATTGATCTCCTTGAGGAGAAGTTAGAAAAGCTCAGGGCCGAAGGAAAGAAGGTCAAGTTCGT
CTATACCGTCTCGACGTTCCAGAACCCGATGGGTGTTACGATGAGCCTTGACAGGCGGAAGAGGCTCGTAGAGCTGGCCC
AAGAGTACGACTTCCTCATCGTTGAGGACAGCCCGTACAGCGAGCTCCGCTACTCCGGAGAGCCAATTCCTCCCATTAAG
CACTTCGACGACGAGGGAAGGGTTATCTATCTCGGCACCTTCTCGAAGATATTTGCTCCGGGCTTCAGGCTGGGATGGGT
AGCGGCCCACCCGCACTTCATCAGGAAGATGGAGATAGCCAAGCAGGCCCTTGACCTCTGTGCCAACCCGTTCGGACAGG
TCATAGCTTGGAAGTACGTTGCCGACGGCTACCTCGACGAGCACATTCCGAGGGTTATAGAGTTCTACAAGCCGAGAAGA
GACGCGATGCTTGAGGCCCTCGAGGAGTACATGCCGGAGGGCGTTAAGTGGACCAAGCCAGACGGAGGAATGTTCATCTG
GGTTACCCTTCCTGAGGGCATCGACACCAAGCTCATGATGGAGAAGGCCGTTGCCAAGGGTGTCGCCTACGTTCCGGGTG
AGGCGTTCTTCGCCCACAGGGACGTCAAGAACACCATGCGCTTGAACTTTACATATGTCCCAGAGGAAAAGATACATGAG
GGCGTTAAGAGGCTTGCAGGAGTCATAGAAGAGGAAATAAAGGCTATCAAGGACTGA

Upstream 100 bases:

>100_bases
AACGACCATTGCAGAAAGATTTATAACCAATCGCCGCTACCATCACATGTATAGAATTGGTGATGCGCTCAAAAGTGTTC
ATTAAATGGGGGGAACGGAA

Downstream 100 bases:

>100_bases
TTCTATCCTTTTCCGTAAACCTTTTTATACTTCCTTCCTCAACTTCTTTCTAGGTGGTCGCTATGAAGCCTCTGATAGGT
ATAATCGGTCAGGTAGACCA

Product: multiple substrate aminotransferase

Products: NA

Alternate protein names: AspB-1 [H]

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MGEKLMRKLSSGSLDFEVYFSDKAQEMKASEIRELLKLVETSDVISLAGGLPAPETFPVETIKKITAEILNTHADKALQY
GTTKGFTPLRLALADWMEKRYGIPTSKVEIMMVAGSQQALDIIGRVFINPGDIVVVEGPTYLAALNAFKYYEPEFVSIPM
DDNGMMIDLLEEKLEKLRAEGKKVKFVYTVSTFQNPMGVTMSLDRRKRLVELAQEYDFLIVEDSPYSELRYSGEPIPPIK
HFDDEGRVIYLGTFSKIFAPGFRLGWVAAHPHFIRKMEIAKQALDLCANPFGQVIAWKYVADGYLDEHIPRVIEFYKPRR
DAMLEALEEYMPEGVKWTKPDGGMFIWVTLPEGIDTKLMMEKAVAKGVAYVPGEAFFAHRDVKNTMRLNFTYVPEEKIHE
GVKRLAGVIEEEIKAIKD

Sequences:

>Translated_418_residues
MGEKLMRKLSSGSLDFEVYFSDKAQEMKASEIRELLKLVETSDVISLAGGLPAPETFPVETIKKITAEILNTHADKALQY
GTTKGFTPLRLALADWMEKRYGIPTSKVEIMMVAGSQQALDIIGRVFINPGDIVVVEGPTYLAALNAFKYYEPEFVSIPM
DDNGMMIDLLEEKLEKLRAEGKKVKFVYTVSTFQNPMGVTMSLDRRKRLVELAQEYDFLIVEDSPYSELRYSGEPIPPIK
HFDDEGRVIYLGTFSKIFAPGFRLGWVAAHPHFIRKMEIAKQALDLCANPFGQVIAWKYVADGYLDEHIPRVIEFYKPRR
DAMLEALEEYMPEGVKWTKPDGGMFIWVTLPEGIDTKLMMEKAVAKGVAYVPGEAFFAHRDVKNTMRLNFTYVPEEKIHE
GVKRLAGVIEEEIKAIKD
>Mature_417_residues
GEKLMRKLSSGSLDFEVYFSDKAQEMKASEIRELLKLVETSDVISLAGGLPAPETFPVETIKKITAEILNTHADKALQYG
TTKGFTPLRLALADWMEKRYGIPTSKVEIMMVAGSQQALDIIGRVFINPGDIVVVEGPTYLAALNAFKYYEPEFVSIPMD
DNGMMIDLLEEKLEKLRAEGKKVKFVYTVSTFQNPMGVTMSLDRRKRLVELAQEYDFLIVEDSPYSELRYSGEPIPPIKH
FDDEGRVIYLGTFSKIFAPGFRLGWVAAHPHFIRKMEIAKQALDLCANPFGQVIAWKYVADGYLDEHIPRVIEFYKPRRD
AMLEALEEYMPEGVKWTKPDGGMFIWVTLPEGIDTKLMMEKAVAKGVAYVPGEAFFAHRDVKNTMRLNFTYVPEEKIHEG
VKRLAGVIEEEIKAIKD

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=427, Percent_Identity=29.9765807962529, Blast_Score=194, Evalue=1e-49,
Organism=Homo sapiens, GI33469970, Length=427, Percent_Identity=29.9765807962529, Blast_Score=194, Evalue=1e-49,
Organism=Escherichia coli, GI1787710, Length=386, Percent_Identity=29.0155440414508, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI1790797, Length=378, Percent_Identity=26.4550264550265, Blast_Score=152, Evalue=5e-38,
Organism=Escherichia coli, GI1788722, Length=318, Percent_Identity=25.1572327044025, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI48994949, Length=402, Percent_Identity=26.3681592039801, Blast_Score=78, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6321236, Length=492, Percent_Identity=26.219512195122, Blast_Score=153, Evalue=4e-38,
Organism=Saccharomyces cerevisiae, GI6321929, Length=467, Percent_Identity=24.1970021413276, Blast_Score=109, Evalue=8e-25,
Organism=Saccharomyces cerevisiae, GI6321000, Length=254, Percent_Identity=28.740157480315, Blast_Score=97, Evalue=4e-21,
Organism=Drosophila melanogaster, GI21356535, Length=414, Percent_Identity=27.2946859903382, Blast_Score=163, Evalue=2e-40,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF00155 Aminotran_1_2 [H]

EC number: NA

Molecular weight: Translated: 47388; Mature: 47256

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEKLMRKLSSGSLDFEVYFSDKAQEMKASEIRELLKLVETSDVISLAGGLPAPETFPVE
CCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHH
TIKKITAEILNTHADKALQYGTTKGFTPLRLALADWMEKRYGIPTSKVEIMMVAGSQQAL
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHH
DIIGRVFINPGDIVVVEGPTYLAALNAFKYYEPEFVSIPMDDNGMMIDLLEEKLEKLRAE
HHHHHHEECCCCEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC
GKKVKFVYTVSTFQNPMGVTMSLDRRKRLVELAQEYDFLIVEDSPYSELRYSGEPIPPIK
CCEEEEEEEEECCCCCCCCEEEHHHHHHHHHHHHHCCEEEECCCCHHHHCCCCCCCCCCC
HFDDEGRVIYLGTFSKIFAPGFRLGWVAAHPHFIRKMEIAKQALDLCANPFGQVIAWKYV
CCCCCCCEEEEECHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHEEHHHH
ADGYLDEHIPRVIEFYKPRRDAMLEALEEYMPEGVKWTKPDGGMFIWVTLPEGIDTKLMM
HCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEECCCCCEEEEEECCCCCCHHHHH
EKAVAKGVAYVPGEAFFAHRDVKNTMRLNFTYVPEEKIHEGVKRLAGVIEEEIKAIKD
HHHHHCCCEECCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GEKLMRKLSSGSLDFEVYFSDKAQEMKASEIRELLKLVETSDVISLAGGLPAPETFPVE
CHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCHH
TIKKITAEILNTHADKALQYGTTKGFTPLRLALADWMEKRYGIPTSKVEIMMVAGSQQAL
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHH
DIIGRVFINPGDIVVVEGPTYLAALNAFKYYEPEFVSIPMDDNGMMIDLLEEKLEKLRAE
HHHHHHEECCCCEEEECCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC
GKKVKFVYTVSTFQNPMGVTMSLDRRKRLVELAQEYDFLIVEDSPYSELRYSGEPIPPIK
CCEEEEEEEEECCCCCCCCEEEHHHHHHHHHHHHHCCEEEECCCCHHHHCCCCCCCCCCC
HFDDEGRVIYLGTFSKIFAPGFRLGWVAAHPHFIRKMEIAKQALDLCANPFGQVIAWKYV
CCCCCCCEEEEECHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCHHHHEEHHHH
ADGYLDEHIPRVIEFYKPRRDAMLEALEEYMPEGVKWTKPDGGMFIWVTLPEGIDTKLMM
HCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEECCCCCEEEEEECCCCCCHHHHH
EKAVAKGVAYVPGEAFFAHRDVKNTMRLNFTYVPEEKIHEGVKRLAGVIEEEIKAIKD
HHHHHCCCEECCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8899719; 11427726 [H]